Commits · 8ee06d5ae3b1f273fecc8444d84011c5a0f23a81 · VEBER Philippe / codepi

03 Jul, 2018 2 commits
- add the "identical" method · 8ee06d5a
  Carine Rey authored Jul 03, 2018
  
  8ee06d5a
- update pcoc docker version · b7c70b84
  Carine Rey authored Jul 03, 2018
  
  b7c70b84
02 Jul, 2018 6 commits
- update trees4analyses · 8ce98c71
  Carine Rey authored Jul 02, 2018
  
  8ce98c71
- update · fe928aab
  Carine Rey authored Jul 02, 2018
  
  fe928aab
- add analyses_test · a6bd3bfe
  Carine Rey authored Jul 02, 2018
  
  a6bd3bfe
- start site num to 1 (and not 0) in diffsel res · 2974f5ed
  Carine Rey authored Jul 02, 2018
  
  2974f5ed
- fix a potential error · 96291517
  Carine Rey authored Jul 02, 2018
  
  96291517
- add a second diffsel chain · 364dcd6f
  Carine Rey authored Jul 02, 2018
  
  364dcd6f
28 Jun, 2018 2 commits
- define the number of cycles for diffsel · afbab61f
  Carine Rey authored Jun 28, 2018
  
  afbab61f
- add different thresholds for each method · 809997d6
  Carine Rey authored Jun 28, 2018
  
  809997d6
27 Jun, 2018 3 commits
- separate diffsel module · d450d4e2
  Philippe Veber authored Jun 27, 2018
  
  d450d4e2
- separate pcoc module · 17572c94
  Philippe Veber authored Jun 27, 2018
  
  17572c94
- put each dataset variant in its own module · 2ac8dfe8
  Philippe Veber authored Jun 27, 2018
  
  2ac8dfe8
26 Jun, 2018 6 commits
- add data for the analyse · 186f64bc
  Carine Rey authored Jun 26, 2018
  
  186f64bc
- refactoring · 5379230d
  Carine Rey authored Jun 26, 2018
  
  5379230d
- add a final plot · 1b01ac9a
  Carine Rey authored Jun 26, 2018
  
  1b01ac9a
- specify encoding · 2fb2c7da
  Carine Rey authored Jun 26, 2018
  
  2fb2c7da
- end results merging · 53a9f01b
  Carine Rey authored Jun 26, 2018
  
  53a9f01b
- add merge_det_results.py · ebe17df1
  Carine Rey authored Jun 26, 2018
  
  ebe17df1
25 Jun, 2018 13 commits
- start the results merging step · 30e06eb7
  Carine Rey authored Jun 25, 2018
  
  30e06eb7
- Merge branch 'to_be_fixed' (typing errors) · 8da43ac3
  Carine Rey authored Jun 25, 2018
  
  8da43ac3
- fix last errors (typing) · 8d6a7441
  Carine Rey authored Jun 25, 2018
  
  8d6a7441
- fixed cyclic dependencies · 639dccf8
  Philippe Veber authored Jun 25, 2018
  
  639dccf8
- error "Dependency cycle" to be fixed: · 4ace80f0
  Carine Rey authored Jun 25, 2018
```
Dependency cycle between modules in _build/default/lib:
   -> Tree_dataset
-> File_formats
-> Convergence_detection
-> File_formats
```
  4ace80f0
- refactoring output_dir · 6cc5433b
  Carine Rey authored Jun 25, 2018
  
  6cc5433b
- add a parsing step after diffsel · 8b3cd971
  Carine Rey authored Jun 25, 2018
  
  8b3cd971
- fix encoding bug · 003d828f
  Carine Rey authored Jun 25, 2018
  
  003d828f
- rm bistro incompatible behavior · 8ca6796c
  Carine Rey authored Jun 25, 2018
  
  8ca6796c
- try to use local python package · b1ac3c14
  Carine Rey authored Jun 25, 2018
  
  b1ac3c14
- add pandas and docopt · 0f25e8c7
  Carine Rey authored Jun 25, 2018
  
  0f25e8c7
- Updated gitignore · f97541b2
  LANORE Vincent authored Jun 25, 2018
  
  f97541b2
- Added missing dependency for the diffsel analysis script · 37076d45
  LANORE Vincent authored Jun 25, 2018
  
  37076d45
22 Jun, 2018 8 commits
- Added temporary script to analyze diffsel trace (it takes the maximum aa... · ca0eedbf
  LANORE Vincent authored Jun 22, 2018
```
Added temporary script to analyze diffsel trace (it takes the maximum aa probability for each site).
```
  ca0eedbf
- add some TODOs · 566892d0
  Carine Rey authored Jun 22, 2018
  
  566892d0
- add temporaly catfasta2phyml in bppsuite docker · 3889e9ef
  Carine Rey authored Jun 22, 2018
  
  3889e9ef
- add bppseqgen multi profiles · c1ba7517
  Carine Rey authored Jun 22, 2018
  
  c1ba7517
- add a new tree · 8dd45285
  Carine Rey authored Jun 22, 2018
  
  8dd45285
- add profile freqs · a9fa799a
  Carine Rey authored Jun 22, 2018
  
  a9fa799a
- refactoring · 3040a425
  Carine Rey authored Jun 22, 2018
  
  3040a425
- update · dce707d1
  Carine Rey authored Jun 22, 2018
  
  dce707d1