Commits · 97c7de52ebefc69c49eea47943a81f40a1a796f8 · VEBER Philippe / codepi

08 Aug, 2018 3 commits
- fix index error · 97c7de52
  Carine Rey authored Aug 08, 2018
  
  97c7de52
- ajout du correctif de Gilles Didier pour msd · c120a7d6
  Carine Rey authored Aug 08, 2018
  
  c120a7d6
- input tree bl x 3 in bppseqgen · 8ac4a10a
  Carine Rey authored Aug 08, 2018
  
  8ac4a10a
02 Aug, 2018 6 commits
- update analyses_night3 · 9f728259
  Carine Rey authored Aug 02, 2018
  
  9f728259
- correction tmp bug reprise automatique diffsel · 3ab3e40f
  Carine Rey authored Aug 02, 2018
  
  3ab3e40f
- add night3 = night + night2 · b3bc08a5
  Carine Rey authored Aug 02, 2018
  
  b3bc08a5
- fix names · 2f6e973e
  Carine Rey authored Aug 02, 2018
  
  2f6e973e
- repo refactoring (continuation) · be2ae394
  Carine Rey authored Aug 02, 2018
  
  be2ae394
- repo refactoring · 0030e37e
  Carine Rey authored Aug 02, 2018
  
  0030e37e
01 Aug, 2018 4 commits
- fix error (no Transition) · 03815065
  Carine Rey authored Aug 01, 2018
  
  03815065
- update analyses · c27b2651
  Carine Rey authored Aug 01, 2018
  
  c27b2651
- add new analyses · 86d04e07
  Carine Rey authored Aug 01, 2018
  
  86d04e07
- add 2 new post_analyse plots · 5d95464a
  Carine Rey authored Aug 01, 2018
  
  5d95464a
31 Jul, 2018 6 commits
- add analyses_night · 5649b154
  Carine Rey authored Jul 31, 2018
  
  5649b154
- new test tree · 1983273e
  Carine Rey authored Jul 31, 2018
  
  1983273e
- use recall/precision to choose the threshold + new hypothesis (bigNeinSmallNe and SmallNeInBigNe) · a46650d4
  Carine Rey authored Jul 31, 2018
  
  a46650d4
- fix error with HaPC*Ne · 3d0b2086
  Carine Rey authored Jul 31, 2018
  
  3d0b2086
- use predefined pairs of profiles in function of their distance · 5fc3531f
  Carine Rey authored Jul 31, 2018
  
  5fc3531f
- add phyml to re infer tree after simu · f22a7cf1
  Carine Rey authored Jul 31, 2018
  
  f22a7cf1
27 Jul, 2018 2 commits
- Corrected bug when pair bins contain only 1 value. · 5ea6131a
  LANORE Vincent authored Jul 27, 2018
  
  5ea6131a
- Changed generate_pairs to output a table of pair indices instead of raw profiles + fixed sorting · a2c8e384
  LANORE Vincent authored Jul 27, 2018
  
  a2c8e384
26 Jul, 2018 7 commits
- generate_pairs: added toggle for distance type. · f84c8737
  LANORE Vincent authored Jul 26, 2018
  
  f84c8737
- generate_pairs: added debug + changed default bin bounds + added png output · 76a56a0b
  LANORE Vincent authored Jul 26, 2018
  
  76a56a0b
- Improved bin size in distance distribution plot. · 8ef90930
  LANORE Vincent authored Jul 26, 2018
  
  8ef90930
- Added option to display plot of pair distributions. · 526093fe
  LANORE Vincent authored Jul 26, 2018
  
  526093fe
- Added an option to specify number of pairs per distance class. · f46a8534
  LANORE Vincent authored Jul 26, 2018
  
  f46a8534
- New bin logic now properly works :) · 5cb204b1
  LANORE Vincent authored Jul 26, 2018
  
  5cb204b1
- Added bin specification in generate_pairs command line (not yet implemented) · 31565450
  LANORE Vincent authored Jul 26, 2018
  
  31565450
25 Jul, 2018 9 commits
- remove header · 2c31730e
  Carine Rey authored Jul 25, 2018
  
  2c31730e
- add type profile + split profile_fn in 3 classes at the beginning of the pipeline · 2a8d34e1
  Carine Rey authored Jul 25, 2018
  
  2a8d34e1
- add matplotlib and docopt in python docker · 525b1d4f
  Carine Rey authored Jul 25, 2018
  
  525b1d4f
- generate_pairs now outputs separate files for distance classes (separation... · 0067c5c2
  LANORE Vincent authored Jul 25, 2018
```
generate_pairs now outputs separate files for distance classes (separation into classes is very simple so far :/)
```
  0067c5c2
- Added Jensen-Shannon divergence and distance + added progress bar · 2ec82128
  LANORE Vincent authored Jul 25, 2018
  
  2ec82128
- generate_pairs now outputs a tsv of profile pairs + distance · b255b6ba
  LANORE Vincent authored Jul 25, 2018
  
  b255b6ba
- More work towards generate_pairs. Now able to pick profiles and compute... · 4f6531ee
  LANORE Vincent authored Jul 25, 2018
```
More work towards generate_pairs. Now able to pick profiles and compute euclidian distance between them.
```
  4f6531ee
- Changed 263 profiles from ssv to tsv · f4d28bc5
  LANORE Vincent authored Jul 25, 2018
  
  f4d28bc5
- Started working on generate_pairs.py script to generate sorted profile pairs. · 3e25eb7a
  LANORE Vincent authored Jul 25, 2018
  
  3e25eb7a
24 Jul, 2018 2 commits
- keep running infos · 172cee79
  Carine Rey authored Jul 24, 2018
  
  172cee79
- autoincremente the number of diffsel iterations · 3d7a93df
  Carine Rey authored Jul 24, 2018
  
  3d7a93df
23 Jul, 2018 1 commit
- fixed scripts/plot_sens_spe_all_trees · 6435d849
  Philippe Veber authored Jul 23, 2018
  
  6435d849