Commits · aeef86f7f597e10ed6a6b655051204ffc9e6cc1b · VEBER Philippe / codepi

12 Sep, 2018 1 commit
- add sum_bl · aeef86f7
  Carine Rey authored Sep 12, 2018
  
  aeef86f7
11 Sep, 2018 6 commits
- update the C4AmaranthaceaePolyroot tree · a168c06f
  Carine Rey authored Sep 11, 2018
  
  a168c06f
- fix seed of test_val · ede49dcc
  Carine Rey authored Sep 11, 2018
  
  ede49dcc
- fix error if preview mode · 60aee25e
  Carine Rey authored Sep 11, 2018
  
  60aee25e
- Merge branch 'plot_dist' of gitlab.in2p3.fr:pveber/reviewphiltrans into plot_dist · 2947e0da
  Carine Rey authored Sep 11, 2018
  
  2947e0da
- fix error if preview · bbdeaa4b
  Carine Rey authored Sep 11, 2018
  
  bbdeaa4b
- Added rescaled tree for new experiments. · 05ed29c6
  LANORE Vincent authored Sep 11, 2018
  
  05ed29c6
10 Sep, 2018 1 commit
- try calculate auc · 0009f51e
  Carine Rey authored Sep 10, 2018
  
  0009f51e
07 Sep, 2018 8 commits
- rm pair distance filter · 5c6f471b
  Carine Rey authored Sep 07, 2018
  
  5c6f471b
- add auc in output but still some pbs with identical · b8f7e2e2
  Carine Rey authored Sep 07, 2018
  
  b8f7e2e2
- clean up in hyp · ef8b0a4b
  Carine Rey authored Sep 07, 2018
  
  ef8b0a4b
- add new hypo (work still in progress) · 01c7a18a
  Carine Rey authored Sep 07, 2018
  
  01c7a18a
- add new hypo (work in progress) · 3351182b
  Carine Rey authored Sep 07, 2018
  
  3351182b
- new plots · 4bbbe597
  Carine Rey authored Sep 07, 2018
  
  4bbbe597
- Revert "try NeG5_NeC_2.5 et NeG2.5_NeC5" · dd32b73a
  Carine Rey authored Sep 07, 2018
```
This reverts commit ed2857b1.
```
  dd32b73a
- try NeG5_NeC_2.5 et NeG2.5_NeC5 · ed2857b1
  Carine Rey authored Sep 07, 2018
  
  ed2857b1
06 Sep, 2018 6 commits
- fix typo · dae465e1
  Carine Rey authored Sep 06, 2018
  
  dae465e1
- add plot Eucl D · 59c6e1db
  Carine Rey authored Sep 06, 2018
  
  59c6e1db
- rm t · 5a434b45
  Carine Rey authored Sep 06, 2018
  
  5a434b45
- add Min in profile.ml + use Unif_3 by default · 27b344e6
  Carine Rey authored Sep 06, 2018
  
  27b344e6
- add NeG1_NeC_5 NeG5_NeC_1 · 6481fe5d
  Carine Rey authored Sep 06, 2018
  
  6481fe5d
- update tdg09 FDR -> LRT + plot · 6145bbaf
  Carine Rey authored Sep 06, 2018
  
  6145bbaf
05 Sep, 2018 2 commits
- add plot dist · 89eb09e8
  Carine Rey authored Sep 05, 2018
  
  89eb09e8
- change aa order · b99a314e
  Carine Rey authored Sep 05, 2018
  
  b99a314e
04 Sep, 2018 10 commits
- Corrected warning in profile.ml · 80b65b06
  LANORE Vincent authored Sep 04, 2018
  
  80b65b06
- refactoring in profile.ml · 1b83c56f
  Carine Rey authored Sep 04, 2018
  
  1b83c56f
- put together all docker env versions · 708615e3
  Carine Rey authored Sep 04, 2018
  
  708615e3
- update bppsuite docker · 98084400
  Carine Rey authored Sep 04, 2018
  
  98084400
- Now computing add_indel seed from global dataset seed. · 692a9283
  LANORE Vincent authored Sep 04, 2018
  
  692a9283
- Pipeline now passes seed to add_indel script (currently a random seed per fna; to be fixed). · 66dbf3dc
  LANORE Vincent authored Sep 04, 2018
  
  66dbf3dc
- Added seed option to indel script (was tested; seems to work). · 5b8de38b
  LANORE Vincent authored Sep 04, 2018
  
  5b8de38b
- Pair generation now takes a seed. · 591a053a
  LANORE Vincent authored Sep 04, 2018
  
  591a053a
- Global seed is now written to file (outdir/global.seed). · bb0c512b
  LANORE Vincent authored Sep 04, 2018
  
  bb0c512b
- Adjusted bounds for profile distance classes (so as not to discard high-distance pairs). · 93a3f87f
  LANORE Vincent authored Sep 04, 2018
  
  93a3f87f
03 Sep, 2018 1 commit
- time_logger: resume on failure operational · 2fc375b6
  Philippe Veber authored Sep 03, 2018
  
  2fc375b6
31 Aug, 2018 5 commits
- Updated tdg09 docker with fixed tdg09 · 9443ef17
  LANORE Vincent authored Aug 31, 2018
  
  9443ef17
- Merge branch 'master' into get_fixed_seeds · 9e81940a
  LANORE Vincent authored Aug 31, 2018
  
  9e81940a
- end add dataset with indels · 0972a129
  Carine Rey authored Aug 31, 2018
  
  0972a129
- add exe · df593f00
  Carine Rey authored Aug 31, 2018
  
  df593f00
- Changed seed calculation to use proper hash functions. · 7a6deec3
  LANORE Vincent authored Aug 31, 2018
  
  7a6deec3