Commits · b45413d6d19aca5e8727205cfcdf8fd0abcd6e12 · VEBER Philippe / codepi

18 Jul, 2018 7 commits
- Auto indentation of everything + removed extra blank lines · b45413d6
  LANORE Vincent authored Jul 18, 2018
  
  b45413d6
- Fixed warning about unused var · 2d04fc2f
  LANORE Vincent authored Jul 18, 2018
  
  2d04fc2f
- Identation + removed empty lines in identical.ml · 1238ccc7
  LANORE Vincent authored Jul 18, 2018
  
  1238ccc7
- change python_basics docker version · 2439efc1
  Carine Rey authored Jul 18, 2018
  
  2439efc1
- change of Ne values to 1/10 (NeSmall) and 10 (NeBig) · 07315f01
  Carine Rey authored Jul 18, 2018
  
  07315f01
- fix error · f259cd87
  Carine Rey authored Jul 18, 2018
  
  f259cd87
- fix error compatibility py2/py3 + clean up · 7d058f3c
  Carine Rey authored Jul 18, 2018
  
  7d058f3c
17 Jul, 2018 17 commits
- Merge branch 'master' of https://gitlab.in2p3.fr/pveber/reviewphiltrans · 37368a9e
  boussau authored Jul 17, 2018
  
  37368a9e
- Replacing a deprecated function call in calc_multinomial.py. · c086bdd6
  boussau authored Jul 17, 2018
  
  c086bdd6
- add detection method: Multinomila (not yet working but the pipeline compiles) · 0e606449
  Carine Rey authored Jul 17, 2018
  
  0e606449
- rename docker image · 4f014a6f
  Carine Rey authored Jul 17, 2018
  
  4f014a6f
- set optional indir in the validation pipeline · 613f233d
  Carine Rey authored Jul 17, 2018
  
  613f233d
- add a post analyse: plot of the simu hyp validation · fb684a8d
  Carine Rey authored Jul 17, 2018
  
  fb684a8d
- tdg09 command is now directly java (instead of a bash script) which should... · 9e609b48
  LANORE Vincent authored Jul 17, 2018
```
tdg09 command is now directly java (instead of a bash script) which should help with sleeping java processes
```
  9e609b48
- Removed larger example tree. · 85bf62c0
  LANORE Vincent authored Jul 17, 2018
  
  85bf62c0
- Merge branch 'master' of https://gitlab.in2p3.fr/pveber/reviewphiltrans · 30d7f3d3
  boussau authored Jul 17, 2018
  
  30d7f3d3
- Built a script to compute multinomial tests to find convergent sites. · 84428e8b
  boussau authored Jul 17, 2018
  
  84428e8b
- fix error in parse tdg09 · 2be36d97
  Carine Rey authored Jul 17, 2018
  
  2be36d97
- clean up · a1606da3
  Carine Rey authored Jul 17, 2018
  
  a1606da3
- Updated gitignore · 6f683a6b
  LANORE Vincent authored Jul 17, 2018
  
  6f683a6b
- Replaced no_diffsel with --fast option that also disables pcoc_c60 · b1cebf4a
  LANORE Vincent authored Jul 17, 2018
  
  b1cebf4a
- add calc_simu_infos.py · 6b50a845
  Carine Rey authored Jul 17, 2018
  
  6b50a845
- add a post analyse : simu_infos · 5b243643
  Carine Rey authored Jul 17, 2018
  
  5b243643
- add a optional option "--ns" to change the number of sites to simulate · bfeb4be8
  Carine Rey authored Jul 17, 2018
  
  bfeb4be8
16 Jul, 2018 11 commits
- fix error (docker image name < 2) · f27431c6
  Carine Rey authored Jul 16, 2018
  
  f27431c6
- Merge branch 't_choices' · cfae0635
  Carine Rey authored Jul 16, 2018
  
  cfae0635
- add a r docker · 5a0589b1
  Carine Rey authored Jul 16, 2018
  
  5a0589b1
- add post analyses · 72ca0d70
  Carine Rey authored Jul 16, 2018
  
  72ca0d70
- cosmetic · 8f68285e
  Carine Rey authored Jul 16, 2018
  
  8f68285e
- add .phy in the ready_dataset ouptut · ecf9c14f
  Carine Rey authored Jul 16, 2018
  
  ecf9c14f
- Removed exit 0 from makefile + updated PHONY · 5dc9ef71
  LANORE Vincent authored Jul 16, 2018
  
  5dc9ef71
- Added Phylip file to simulation output + minor indentation · 45cac61a
  LANORE Vincent authored Jul 16, 2018
  
  45cac61a
- Put calc_identical.py as program name in an error message of calc_multinomial.py. · 2918632f
  boussau authored Jul 16, 2018
  
  2918632f
- add option to useor not the H0+Ha_pcoc concatenation · 64f23079
  Carine Rey authored Jul 16, 2018
  
  64f23079
- fix diffsel version · b8338913
  Carine Rey authored Jul 16, 2018
  
  b8338913
15 Jul, 2018 2 commits
- cosmetics · 08d5dbb5
  Philippe Veber authored Jul 15, 2018
  
  08d5dbb5
- Makefile: really clean · 5cceab27
  Philippe Veber authored Jul 15, 2018
  
  5cceab27
14 Jul, 2018 1 commit
- fix error (good tree annotation for diffsel) · 893772d0
  Carine Rey authored Jul 14, 2018
  
  893772d0
13 Jul, 2018 2 commits
- fix error (typo) · 0215511b
  Carine Rey authored Jul 13, 2018
  
  0215511b
- fix error (typo) · effca6a9
  Carine Rey authored Jul 13, 2018
  
  effca6a9