Commits · b72f35275986d25481dc5e16cdccaf77f2c2dbc5 · VEBER Philippe / codepi

12 Jul, 2018 13 commits
- change color scale · b72f3527
  Carine Rey authored Jul 12, 2018
  
  b72f3527
- simplify *fa.info · cc17805d
  Carine Rey authored Jul 12, 2018
  
  cc17805d
- specify to pcoc to use c10 · 89c18c48
  Carine Rey authored Jul 12, 2018
  
  89c18c48
- run a subset of models if preview · 57ef1938
  Carine Rey authored Jul 12, 2018
  
  57ef1938
- save profiles use for simulation · b8f2ef94
  Carine Rey authored Jul 12, 2018
  
  b8f2ef94
- added html logger · 76b4074e
  Philippe Veber authored Jul 12, 2018
  
  76b4074e
- fix a potential error in plot_data.py · 8868e724
  Carine Rey authored Jul 12, 2018
  
  8868e724
- add option plot_all_sites in plot_merge_results · ada8011e
  Carine Rey authored Jul 12, 2018
  
  ada8011e
- fix bl · 2ecd2cb7
  Carine Rey authored Jul 12, 2018
  
  2ecd2cb7
- change diffsel_mean threshold to 0.11 · 50a3af40
  Carine Rey authored Jul 12, 2018
  
  50a3af40
- reduce stringency + fix error if no transition at a leaf · 7af3a9d4
  Carine Rey authored Jul 12, 2018
  
  7af3a9d4
- Adding a selection of 263 profiles to example/aa_fitness/ · 04865e0d
  boussau authored Jul 12, 2018
  
  04865e0d
- plot mean and max for diffsel · 204e6466
  Carine Rey authored Jul 12, 2018
  
  204e6466
11 Jul, 2018 8 commits
- add new trees · 452d2794
  Carine Rey authored Jul 11, 2018
  
  452d2794
- add HaPC · 155bd5df
  Carine Rey authored Jul 11, 2018
  
  155bd5df
- Merge branch 'real_input_data' · e599f322
  Carine Rey authored Jul 11, 2018
  
  e599f322
- add real data analyse · a2a02222
  Carine Rey authored Jul 11, 2018
  
  a2a02222
- fix errors comming from real data (indels) · 7ee9fe7d
  Carine Rey authored Jul 11, 2018
  
  7ee9fe7d
- add real_data in the detection pipeline · 672218d3
  Carine Rey authored Jul 11, 2018
  
  672218d3
- add real data · 45aea615
  Carine Rey authored Jul 11, 2018
  
  45aea615
- Corrected bug (hanging popen if stdout is too big) in try_again · f8512d1e
  LANORE Vincent authored Jul 11, 2018
  
  f8512d1e
10 Jul, 2018 16 commits
- Changed number of sites for make analyses to 50 · c47d0740
  LANORE Vincent authored Jul 10, 2018
  
  c47d0740
- Modified analysis for diffsel · f8aa1c1a
  LANORE Vincent authored Jul 10, 2018
  
  f8aa1c1a
- fix python2 compatibility error · e67f59cb
  Carine Rey authored Jul 10, 2018
  
  e67f59cb
- Updated try_again (debug on stderr + only last stdout is displayed + exponential timeout) · d4c3c6e9
  LANORE Vincent authored Jul 10, 2018
  
  d4c3c6e9
- update tdg09 docker version · 6ab3f384
  Carine Rey authored Jul 10, 2018
  
  6ab3f384
- add a timeout at Tdg09 · e1837425
  Carine Rey authored Jul 10, 2018
  
  e1837425
- Fixed timeout being unused · fa2f9b7f
  LANORE Vincent authored Jul 10, 2018
  
  fa2f9b7f
- add PC and OC in the final plot · 1947c69d
  Carine Rey authored Jul 10, 2018
  
  1947c69d
- Added "try again" script · 8497cf04
  LANORE Vincent authored Jul 10, 2018
  
  8497cf04
- refactoring · cd2dd003
  Carine Rey authored Jul 10, 2018
  
  cd2dd003
- fix error: bad input tree in the outdir (but broken link) · fd5ff577
  Carine Rey authored Jul 03, 2018
  
  fd5ff577
- add H0+Ha · 99b996a3
  Carine Rey authored Jul 10, 2018
  
  99b996a3
- Fix of the fix · 875124f2
  LANORE Vincent authored Jul 10, 2018
  
  875124f2
- Fixed typo in new analyze script · 28ccc6f6
  LANORE Vincent authored Jul 10, 2018
  
  28ccc6f6
- add different Ne values + some refactoring) · a5a8fee7
  Carine Rey authored Jul 10, 2018
  
  a5a8fee7
- Updated diffsel analysis script to take results close to 0 into account. · a2a5d6e0
  LANORE Vincent authored Jul 10, 2018
  
  a2a5d6e0
09 Jul, 2018 3 commits
- fix error if only 1 aa in the contengency table · 101d8fed
  Carine Rey authored Jul 09, 2018
  
  101d8fed
- add HxNe hypothesis (working but Ne parameter to be fixed) · 653893fc
  Carine Rey authored Jul 09, 2018
  
  653893fc
- Last fix is now optimized for clarity · f065a29f
  LANORE Vincent authored Jul 09, 2018
  
  f065a29f