Commits · d1645dc49def4424229ccaf92603235467d69376 · VEBER Philippe / codepi

24 Sep, 2018 1 commit
- update final figure · d1645dc4
  Carine Rey authored Sep 24, 2018
  
  d1645dc4
21 Sep, 2018 2 commits
- Added 1->8 to hypothesis list. · a498fd88
  LANORE Vincent authored Sep 21, 2018
  
  a498fd88
- Preparing everything for this weekend's run. · 98967d32
  LANORE Vincent authored Sep 21, 2018
  
  98967d32
20 Sep, 2018 3 commits
- More refactoring. · 907d47ca
  LANORE Vincent authored Sep 20, 2018
  
  907d47ca
- Big overhaul of hypothesis management. · 4a026c95
  LANORE Vincent authored Sep 20, 2018
  
  4a026c95
- Working on simplifying the hypothesis management. · 40136eae
  LANORE Vincent authored Sep 20, 2018
  
  40136eae
19 Sep, 2018 1 commit
- remove_saturated_sites in testnh · bb9f7ab1
  Carine Rey authored Sep 19, 2018
  
  bb9f7ab1
18 Sep, 2018 6 commits
- add AUC · c7bba10d
  Carine Rey authored Sep 18, 2018
  
  c7bba10d
- more hypothesis · 06285cb2
  Carine Rey authored Sep 18, 2018
  
  06285cb2
- rm --fast from the test_val · 1ff53ffb
  Carine Rey authored Sep 18, 2018
  
  1ff53ffb
- Updated makefile for tonight's runs. · 85cc0e23
  LANORE Vincent authored Sep 18, 2018
  
  85cc0e23
- Added options --diffsel and --c60 to toggle diffsel and c60 (off by default) +... · d0d2d6e3
  LANORE Vincent authored Sep 18, 2018
```
Added options --diffsel and --c60 to toggle diffsel and c60 (off by default) + removed simulation and detection subcommands.
```
  d0d2d6e3
- Expanded gitignore. · 0b973e9b
  LANORE Vincent authored Sep 18, 2018
  
  0b973e9b
14 Sep, 2018 15 commits
- fix error · 46e267bb
  Carine Rey authored Sep 14, 2018
  
  46e267bb
- Preparations for the weekend's run! · 40cb053a
  LANORE Vincent authored Sep 14, 2018
  
  40cb053a
- More fixes to the R script for the plots. · dc0dfa2e
  LANORE Vincent authored Sep 14, 2018
  
  dc0dfa2e
- Fixed some error in the R script for the plot. · 09a510b0
  LANORE Vincent authored Sep 14, 2018
  
  09a510b0
- update t_choices with the new hyps · 913dff84
  Carine Rey authored Sep 14, 2018
  
  913dff84
- Added new hypotheses for this weekend's run. · 16858e78
  LANORE Vincent authored Sep 14, 2018
  
  16858e78
- prep dn ds diversity analyses · 39680754
  Carine Rey authored Sep 14, 2018
  
  39680754
- Added two more trees (orthomam with different conditions). · 399325fe
  LANORE Vincent authored Sep 14, 2018
  
  399325fe
- Added ratio output to inferred tree script · 38246e33
  LANORE Vincent authored Sep 13, 2018
  
  38246e33
- improve plot · 0e9c7c3b
  Carine Rey authored Sep 14, 2018
  
  0e9c7c3b
- fix error reprodcucibility · 592fee23
  Carine Rey authored Sep 14, 2018
  
  592fee23
- rm plot to save stockage · c84d0c5f
  Carine Rey authored Sep 14, 2018
  
  c84d0c5f
- improve plot · 4a30f0cc
  Carine Rey authored Sep 14, 2018
  
  4a30f0cc
- fix typo · d10933f3
  Carine Rey authored Sep 14, 2018
  
  d10933f3
- add testnh · f3cf278e
  Carine Rey authored Sep 14, 2018
  
  f3cf278e
13 Sep, 2018 3 commits
- fix typo · 962ce952
  Carine Rey authored Sep 13, 2018
  
  962ce952
- Added script to compute inferred tree lengths from ali+tree · 2f05ec1c
  LANORE Vincent authored Sep 13, 2018
  
  2f05ec1c
- update bppphyl version · 22cc0113
  Carine Rey authored Sep 13, 2018
  
  22cc0113
12 Sep, 2018 9 commits
- Did some cleaning in the trees. Removed all duplicates except rescaled +... · cba3af5b
  LANORE Vincent authored Sep 12, 2018
```
Did some cleaning in the trees. Removed all duplicates except rescaled + removed all bl_X trees except rescaled
```
  cba3af5b
- Added the script that was used to make the distance/score stacked bar plots. · 2b93d1dd
  LANORE Vincent authored Sep 12, 2018
  
  2b93d1dd
- Removed unused variables warnings :) · 6ff457e1
  LANORE Vincent authored Sep 12, 2018
  
  6ff457e1
- add sum_bl · 1f0be708
  Carine Rey authored Sep 12, 2018
  
  1f0be708
- update the C4AmaranthaceaePolyroot tree · 289b9991
  Carine Rey authored Sep 11, 2018
  
  289b9991
- fix seed of test_val · 85a79617
  Carine Rey authored Sep 11, 2018
  
  85a79617
- fix error if preview mode · 7bf2cdd2
  Carine Rey authored Sep 11, 2018
  
  7bf2cdd2
- fix error if preview · 5fdb758a
  Carine Rey authored Sep 11, 2018
  
  5fdb758a
- Added rescaled tree for new experiments. · c35dafd6
  LANORE Vincent authored Sep 11, 2018
  
  c35dafd6