Commits · e594f2a8f22693464db345c95b9f5a7d399f07a0 · VEBER Philippe / codepi

17 Nov, 2020 17 commits
- removed buggy version of multinomial · e594f2a8
  Philippe Veber authored Nov 17, 2020
  
  e594f2a8
- tk/Cpt: fixed bug · 27217276
  Philippe Veber authored Nov 17, 2020
  
  27217276
- Simulation_pipeline.Mutsel: separate benchmark of its rds output · 8d3102fe
  Philippe Veber authored Nov 17, 2020
  
  8d3102fe
- Simulation_pipeline.Mutsel.benchmark: use all columns in cpt files · 54d6b1a3
  Philippe Veber authored Nov 17, 2020
  
  54d6b1a3
- tk: new Cpt module · ce9c40f6
  Philippe Veber authored Nov 17, 2020
  
  ce9c40f6
- tk/Dataframe: added columns · 9dcc49a4
  Philippe Veber authored Nov 17, 2020
  
  9dcc49a4
- More precise type for detection method outputs · 8e7685ab
  Philippe Veber authored Nov 17, 2020
  
  8e7685ab
- File_formats: fixed phylip format · 8210cff4
  Philippe Veber authored Nov 17, 2020
  
  8210cff4
- File_formats: removed redundant nw · d4a259a7
  Philippe Veber authored Nov 17, 2020
  
  d4a259a7
- removed app/diffseldsparse_benchmark · ba9835df
  Philippe Veber authored Nov 17, 2020
  
  ba9835df
- renamed Simulation_dataset into Simulation_pipeline · e4fd8e26
  Philippe Veber authored Nov 17, 2020
  
  e4fd8e26
- Simulation_dataset: separate in-house simulation and bppseqgen's · bbdd8e37
  Philippe Veber authored Nov 17, 2020
  
  bbdd8e37
- Detection_pipeline: include ops from query · 265897c0
  Philippe Veber authored Nov 17, 2020
  
  265897c0
- File_format: nhx special case of newick · 93b3460e
  Philippe Veber authored Nov 17, 2020
  
  93b3460e
- Simulation_dataset: new signature · 1a09d0ef
  Philippe Veber authored Nov 17, 2020
  
  1a09d0ef
- Simulation_dataset: renaming · a2508335
  Philippe Veber authored Nov 17, 2020
  
  a2508335
- moved lib/toolbox to lib/tk · b295e9ff
  Philippe Veber authored Nov 17, 2020
  
  b295e9ff
11 Nov, 2020 6 commits
- Simulation_dataset.benchmark_stats: fixed bug · 9a03de8b
  Philippe Veber authored Nov 11, 2020
  
  9a03de8b
- tk/Convergence_tree: added test · 94013a1b
  Philippe Veber authored Nov 11, 2020
  
  94013a1b
- generate R-readable summary out of benchmark · 74b927db
  Philippe Veber authored Nov 11, 2020
  
  74b927db
- update .ocamlinit · 4434509f
  Philippe Veber authored Nov 11, 2020
  
  4434509f
- evaluation by average precision · d4686c3b
  Philippe Veber authored Nov 11, 2020
  
  d4686c3b
- implemented precision recall curve and auc calculations · 12b017f6
  Philippe Veber authored Nov 11, 2020
  
  12b017f6
09 Nov, 2020 5 commits
- update wrt biotk · 281111f8
  Philippe Veber authored Nov 09, 2020
  
  281111f8
- lmm benchmark · 2079ac34
  Philippe Veber authored Nov 09, 2020
  
  2079ac34
- RP curve: allow to choose column in result file · eb0e6316
  Philippe Veber authored Nov 09, 2020
  
  eb0e6316
- refactored simulation to use tk · 702df100
  Philippe Veber authored Nov 09, 2020
  
  702df100
- tk: new simulator module · 194e8dde
  Philippe Veber authored Nov 09, 2020
  
  194e8dde
08 Nov, 2020 2 commits
- scripts: don't check if tree is rooted when not necessary · c356bed6
  Philippe Veber authored Nov 08, 2020
  
  c356bed6
- data/rubisco: fixed fasta character encoding · a0c6b95c
  Philippe Veber authored Nov 08, 2020
  
  a0c6b95c
07 Nov, 2020 7 commits
- new Rubisco_dataset module · 2b1cde4a
  Philippe Veber authored Nov 07, 2020
  
  2b1cde4a
- tk/Convergence_tree: exposed reset_transitions · db76c9da
  Philippe Veber authored Nov 07, 2020
  
  db76c9da
- data/rubisco: syntax fixes · e960f289
  Philippe Veber authored Nov 07, 2020
  
  e960f289
- tk: new Let_syntax module · 4f6671ff
  Philippe Veber authored Nov 07, 2020
  
  4f6671ff
- tk/Convergence_tree: added to_newick_tree · 527fa3c3
  Philippe Veber authored Nov 07, 2020
  
  527fa3c3
- tk/Convergence_tree: cleaner interface · 94f0f0e6
  Philippe Veber authored Nov 07, 2020
  
  94f0f0e6
- tk/Dataframe: header specification for parsing · 5c3aaabf
  Philippe Veber authored Nov 07, 2020
  
  5c3aaabf
06 Nov, 2020 3 commits
- Tree rooted using a python script. · 4ebc5b3a
  BOUSSAU Bastien authored Nov 03, 2020
  
  4ebc5b3a
- added rubisco dataset · e8169c33
  Philippe Veber authored Nov 06, 2020
  
  e8169c33
- reorganized datasets · d7bc2f10
  Philippe Veber authored Nov 06, 2020
  
  d7bc2f10