Commits · f12954e9b0245eb6be33cebeab13c916315f8fff · VEBER Philippe / codepi

28 Mar, 2020 2 commits
- Orthomam: refactoring to enable use of orthomam tree · f12954e9
  Philippe Veber authored Mar 28, 2020
  
  f12954e9
- toolbox/Orthomam_db: access to tree · b5da101c
  Philippe Veber authored Mar 28, 2020
  
  b5da101c
25 Mar, 2020 2 commits
- multinomial works on orthomam · 64d42036
  Philippe Veber authored Mar 25, 2020
  
  64d42036
- Orthomam: add Transition tag in tree · 1848fbca
  Philippe Veber authored Mar 25, 2020
  
  1848fbca
24 Mar, 2020 6 commits
- orthomam: call to caml multinomial works · 4e798925
  Philippe Veber authored Mar 24, 2020
  
  4e798925
- orthomam: fixed typo in module name · 4dadcb09
  Philippe Veber authored Mar 24, 2020
  
  4dadcb09
- orthomam: specify the set of convergent species · 8489328b
  Philippe Veber authored Mar 24, 2020
  
  8489328b
- update wrt phylogenetics · 94e2f9c0
  Philippe Veber authored Mar 24, 2020
  
  94e2f9c0
- Result_table: added interface, optional oracle · b161a3da
  Philippe Veber authored Mar 24, 2020
  
  b161a3da
- dune: fix a compilation problem related to ocamlnet via biotk · 3e4064ad
  Philippe Veber authored Mar 24, 2020
  
  3e4064ad
19 Mar, 2020 5 commits
- ocamlinit: convenience change · 9411332d
  Philippe Veber authored Mar 19, 2020
  
  9411332d
- Detection_pipeline: added signature and refactored · 4edf937b
  Philippe Veber authored Mar 19, 2020
  
  4edf937b
- Multinomial: minor fix · 4ed2be80
  Philippe Veber authored Mar 19, 2020
  
  4ed2be80
- Orthomam_db: use full paths as alignment representation · bc73c846
  Philippe Veber authored Mar 19, 2020
  
  bc73c846
- File_formats: added phylip and newick · 89862452
  Philippe Veber authored Mar 19, 2020
  
  89862452
03 Mar, 2020 1 commit
- update wrt bistro · f7c87dee
  Philippe Veber authored Mar 03, 2020
  
  f7c87dee
02 Mar, 2020 1 commit
- Detection pipeline for orthomam · c4276e15
  Philippe Veber authored Mar 02, 2020
  
  c4276e15
01 Mar, 2020 1 commit
- update wrt bistro · 7d33bbfc
  Philippe Veber authored Mar 01, 2020
  
  7d33bbfc
06 Feb, 2020 6 commits
- README: update install · ebcca7dc
  Philippe Veber authored Feb 06, 2020
  
  ebcca7dc
- fixed previous commit · fe7f3816
  Philippe Veber authored Feb 06, 2020
  
  fe7f3816
- dune-project: removed useless dep on str · e6eb3cad
  Philippe Veber authored Feb 06, 2020
  
  e6eb3cad
- dune-project: fix dev repo · 3ec45f42
  Philippe Veber authored Feb 06, 2020
  
  3ec45f42
- set opam file and dune-project · ab0d4fe8
  Philippe Veber authored Feb 06, 2020
  
  ab0d4fe8
- update wrt world · 9c9ddd3b
  Philippe Veber authored Feb 06, 2020
  
  9c9ddd3b
13 Dec, 2019 1 commit
- update wrt phylogenetics and bistro · a3df223f
  Philippe Veber authored Dec 13, 2019
  
  a3df223f
08 Nov, 2019 1 commit
- add pcoc_v2 (V1 implementation with C10/C60 + manual profils with V1 implementation) · e5695953
  Carine Rey authored Nov 08, 2019
  
  e5695953
09 Oct, 2019 2 commits
- add option --dnds (calc dn ds dn/ds trees; add option --gt (calc gene trees) · 02b0d86b
  Carine Rey authored Oct 09, 2019
  
  02b0d86b
- Add gene tree building using raxmlng · ca2ce705
  Carine Rey authored Oct 09, 2019
  
  ca2ce705
08 Oct, 2019 4 commits
- Makefile: update tests · b2337639
  Carine Rey authored Oct 08, 2019
  
  b2337639
- realdata: add a output repo with parsed input files · 91b4df22
  Carine Rey authored Oct 08, 2019
  
  91b4df22
- reviewphiltrans_app: fix typo · 5719e39f
  Carine Rey authored Oct 08, 2019
  
  5719e39f
- reviewphiltrans_app: add options for pcoc* diffsel identical topological + a logger · 0749c915
  Carine Rey authored Oct 08, 2019
  
  0749c915
27 Sep, 2019 6 commits
- app/Reviewphiltrans: added use_diffsel option · 603a2404
  Philippe Veber authored Sep 27, 2019
  
  603a2404
- ocamlinit: commenting · ee7d3395
  Philippe Veber authored Sep 27, 2019
  
  ee7d3395
- app/Reviewphiltrans: switch to new real data pipeline · 057f45bd
  Philippe Veber authored Sep 27, 2019
  
  057f45bd
- New module Real_dataset: pipeline for real datasets! · ac2adfb0
  Philippe Veber authored Sep 27, 2019
  
  ac2adfb0
- Pipeline refactoring (added functor) · 7b241068
  Philippe Veber authored Sep 27, 2019
  
  7b241068
- Parse_input_tree.py : split file to remove dependencies · ff0000aa
  Carine Rey authored Sep 27, 2019
  
  ff0000aa
20 Sep, 2019 2 commits
- Merge branch 'real_data' · c6cb3658
  Philippe Veber authored Sep 20, 2019
```
note that due to incompatible changes, intermediate commits won't
likely compile on this branch
```
  c6cb3658
- fix compilation errors due to merge with master · 98eaf13c
  Philippe Veber authored Sep 20, 2019
  
  98eaf13c