Commits · master · VEBER Philippe / codepi

22 Sep, 2022 1 commit
- update wrt phylogenetics, core · 3d1ccac0
  Philippe Veber authored Sep 22, 2022
  
  3d1ccac0
06 Mar, 2022 2 commits
- added msd method in CLI · 5d25cb92
  Philippe Veber authored Mar 06, 2022
  
  5d25cb92
- update wrt Phylogenetics · 671c8347
  Philippe Veber authored Mar 06, 2022
  
  671c8347
24 Dec, 2021 15 commits
- dune-project: fixed deps · 77354582
  Philippe Veber authored Dec 24, 2021
  
  77354582
- Merge branch 'appification' · 7cf54e70
  Philippe Veber authored Dec 24, 2021
  
  7cf54e70
- Run_cmd: candidate site report now optional · adc5c925
  Philippe Veber authored Dec 24, 2021
  
  adc5c925
- Run_cmd: can now be run on a single alignment more easily · 7498fc59
  Philippe Veber authored Dec 24, 2021
  
  7498fc59
- unused code removal · 67a39cfd
  Philippe Veber authored Dec 24, 2021
  
  67a39cfd
- Run_cmd: added topological · e0fe2a3e
  Philippe Veber authored Dec 24, 2021
  
  e0fe2a3e
- Run_cmd: added identical · 3f09cfc7
  Philippe Veber authored Dec 24, 2021
  
  3f09cfc7
- removed unused module Real_dataset · 6da33260
  Philippe Veber authored Dec 24, 2021
  
  6da33260
- Run_cmd: added diffsel · 7365df1c
  Philippe Veber authored Dec 24, 2021
  
  7365df1c
- updated pcoc version · 59d7bcdf
  Philippe Veber authored Dec 24, 2021
  
  59d7bcdf
- updated diffsel wrt spcd-benchmark · 1f6364d4
  Philippe Veber authored Dec 24, 2021
```
and removed unused code
```
  1f6364d4
- app: disabled matrix_exponential_bench, which depends on pelican · a6cdeb67
  Philippe Veber authored Dec 24, 2021
  
  a6cdeb67
- lib/Run_cmd: print list of available methods · 569a4c0f
  Philippe Veber authored Dec 24, 2021
  
  569a4c0f
- app: output result tables in run mode · e7cbffaa
  Philippe Veber authored Dec 24, 2021
  
  e7cbffaa
- whitespaces · 392cc26b
  Philippe Veber authored Dec 24, 2021
  
  392cc26b
23 Dec, 2021 5 commits
- dropped dep on owl · adb866e1
  Philippe Veber authored Dec 23, 2021
  
  adb866e1
- un-owl multinomial test · 788c8cc9
  Philippe Veber authored Dec 23, 2021
  
  788c8cc9
- renamed Run into Run_cmd · f4ac9ea8
  Philippe Veber authored Dec 23, 2021
  
  f4ac9ea8
- use now published prc library · b45e53a3
  Philippe Veber authored Dec 23, 2021
  
  b45e53a3
- update wrt world · c178815c
  Philippe Veber authored Dec 23, 2021
  
  c178815c
16 May, 2021 1 commit
- update wrt phylogenetics · 1b7024a2
  Philippe Veber authored May 16, 2021
  
  1b7024a2
03 May, 2021 5 commits
- Utils: added fasta_of_phylip · 1cd02b28
  Philippe Veber authored Apr 28, 2021
  
  1cd02b28
- Dataset: added clip_alignment_on_tree_leaves · 3bc5eac1
  Philippe Veber authored May 03, 2021
  
  3bc5eac1
- Dataset: fixed clip alignment typing · a1446ac6
  Philippe Veber authored May 03, 2021
  
  a1446ac6
- Tdg09: added type annotation · 7ae829ec
  Philippe Veber authored Apr 28, 2021
  
  7ae829ec
- Tdg09: inhouse implementation accepts '?' characters · a4582755
  Philippe Veber authored Apr 28, 2021
  
  a4582755
29 Apr, 2021 2 commits
- lmm_benchmark: added graphical output · edddd4ce
  Philippe Veber authored Apr 29, 2021
  
  edddd4ce
- Inhouse_lmm.test: added forgotten dep on design matrix param · 74a7a363
  Philippe Veber authored Apr 29, 2021
  
  74a7a363
16 Apr, 2021 4 commits
- calibration: lmm calibration representation · 4a80543b
  Philippe Veber authored Apr 16, 2021
  
  4a80543b
- whitespace commit · 6c4d8191
  Louis Duchemin authored Apr 12, 2021
  
  6c4d8191
- notes/calibration: changed representation for calibration under null · 437cf2e3
  Philippe Veber authored Apr 16, 2021
  
  437cf2e3
- update wrt phylogenetics, tdg09 sims are now deterministic · 487f8876
  Philippe Veber authored Apr 15, 2021
  
  487f8876
12 Apr, 2021 1 commit
- LMM : benchmark for chemical props + API refactoring · 8f09c49e
  Louis Duchemin authored Apr 12, 2021
  
  8f09c49e
08 Apr, 2021 1 commit
- notes/calibration: enhanced benchmark figure · e33062cb
  Philippe Veber authored Apr 08, 2021
  
  e33062cb
06 Apr, 2021 1 commit
- Mutsel CpG : hypermutability applies to convergent branches only · 9e9674d1
  Louis Duchemin authored Apr 06, 2021
  
  9e9674d1
02 Apr, 2021 2 commits
- Update install instructions for dependencies · 583bb343
  Louis Duchemin authored Apr 02, 2021
  
  583bb343
- Update install instructions for dependencies · 5b2b048b
  Louis Duchemin authored Apr 02, 2021
  
  5b2b048b