FROM r-base

MAINTAINER Carine Rey carine.rey@ens-lyon.org

RUN echo 'install.packages(c("optparse", "ggplot2", "reshape2", "cowplot", "coda"), repos="https://mirror.ibcp.fr/pub/CRAN/", dependencies=TRUE)' > /tmp/packages.R \
&& Rscript /tmp/packages.R

RUN apt-get update && \
    apt-get install --no-install-recommends -qy \
    pandoc

RUN echo 'source("https://bioconductor.org/biocLite.R"); biocLite("ggtree")' > /tmp/packages.R \
&& Rscript /tmp/packages.R