Docker-in-Docker (DinD) capabilities of public runners deactivated. More info

Commit 7f47ef50 authored by DELMOTTE Stephane's avatar DELMOTTE Stephane
Browse files

changement de version de R

parent 495a9df6
......@@ -36,16 +36,16 @@
- name: ajout de la signature pour R-3.6
- name: ajout de la signature pour R-4.1.0
apt_key:
keyserver: "hkp://keyserver.ubuntu.com:80"
id: E298A3A825C0D65DFD57CBB651716619E084DAB9
- name: ajout du dépot R-3.6
- name: ajout du dépot R-4.1
apt_repository:
repo: deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/
repo: deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran40/
- name: installation de R-3.6
- name: installation de R-4.1
apt:
name: "{{ item }}"
state: present
......@@ -65,52 +65,52 @@
# - name: telechargement de conda
# command: "wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh"
- name: telechargement de conda
command: "wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh"
# - name: installation de conda
# command: "bash Miniconda3-latest-Linux-x86_64.sh -u -b -p /opt"
- name: installation de conda
command: "bash Miniconda3-latest-Linux-x86_64.sh -u -b -p /opt"
# - name: activation de l'environnement conda pour l'utilisateur root
# shell: "/opt/bin/conda init bash"
- name: activation des chanels conda pour root
shell: "/var/lib/miniconda3/condabin/conda config --add channels {{ item }}"
become: yes
become_user: ubuntu
with_items:
- defaults
- conda-forge
- bioconda
# - name: activation des chanels conda pour root
# shell: "/var/lib/miniconda3/condabin/conda config --add channels {{ item }}"
# become: yes
# become_user: ubuntu
# with_items:
# - defaults
# - conda-forge
# - bioconda
- name: installation des programmes via conda pour l'ensemble des utilisateurs
command: "/var/lib/miniconda3/condabin/conda install {{ item }} -y --channel bioconda"
with_items:
- fastqc
- sra-tools
- abyss
- idba
# - name: installation des programmes via conda pour l'ensemble des utilisateurs
# command: "/var/lib/miniconda3/condabin/conda install {{ item }} -y --channel bioconda"
# with_items:
# - fastqc
# - sra-tools
# - abyss
# - idba
- name: creation de l'environnement myenv
shell: "/var/lib/miniconda3/condabin/conda create -y --name myenv"
become: yes
become_user: ubuntu
# - name: creation de l'environnement myenv
# shell: "/var/lib/miniconda3/condabin/conda create -y --name myenv"
# become: yes
# become_user: ubuntu
- name: installation des package dans myenv pour l'utilisateur ubuntu
shell: "/var/lib/miniconda3/condabin/conda install {{ item }} -y --channel bioconda --name myenv"
become: yes
become_user: ubuntu
with_items:
# - ray
- kmergenie
- busco
- quast
# - name: installation des package dans myenv pour l'utilisateur ubuntu
# shell: "/var/lib/miniconda3/condabin/conda install {{ item }} -y --channel bioconda --name myenv"
# become: yes
# become_user: ubuntu
# with_items:
# # - ray
# - kmergenie
# - busco
# - quast
# - name: activation de l'environnement conda pour l'utilisateur root
# shell: "/var/lib/miniconda3/condabin/conda init bash"
......
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