Docker-in-Docker (DinD) capabilities of public runners deactivated. More info

Commit ec690b06 authored by DELMOTTE Stephane's avatar DELMOTTE Stephane
Browse files

ajout des environnements conda

parent db1effa9
......@@ -76,41 +76,41 @@
# shell: "/opt/bin/conda init bash"
# - name: activation des chanels conda pour root
# shell: "/opt/bin/conda config --add channels {{ item }}"
# become: yes
# become_user: ubuntu
# with_items:
# - defaults
# - conda-forge
# - bioconda
- name: activation des chanels conda pour root
shell: "/opt/bin/conda config --add channels {{ item }}"
become: yes
become_user: ubuntu
with_items:
- defaults
- conda-forge
- bioconda
# - name: installation des programmes via conda pour l'ensemble des utilisateurs
# command: "/opt/bin/conda install {{ item }} -y --channel bioconda"
# with_items:
# - fastqc
# - sra-tools
# - abyss
# - idba
- name: installation des programmes via conda pour l'ensemble des utilisateurs
command: "/opt/bin/conda install {{ item }} -y --channel bioconda"
with_items:
- fastqc
- sra-tools
- abyss
- idba
# - name: creation de l'environnement myenv
# shell: "/opt/bin/conda create -y --name myenv"
# # become: yes
# # become_user: ubuntu
- name: creation de l'environnement myenv
shell: "/opt/bin/conda create -y --name myenv"
become: yes
become_user: ubuntu
# - name: installation des package dans myenv pour l'utilisateur ubuntu
# shell: "/opt/bin/conda install {{ item }} -y --channel bioconda --name myenv"
# # become: yes
# # become_user: ubuntu
# with_items:
# # - ray
# - kmergenie
# - busco
# - quast
- name: installation des package dans myenv pour l'utilisateur ubuntu
shell: "/opt/bin/conda install {{ item }} -y --channel bioconda --name myenv"
# become: yes
# become_user: ubuntu
with_items:
# - ray
- kmergenie
- busco
- quast
# - name: activation de l'environnement conda pour l'utilisateur root
# shell: "/opt/bin/conda init bash"
......
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