Docker-in-Docker (DinD) capabilities of public runners deactivated. More info

Commit ffebb976 authored by DELMOTTE Stephane's avatar DELMOTTE Stephane
Browse files

ajout des environnements conda changement du chemin

parent ec690b06
......@@ -77,7 +77,7 @@
- name: activation des chanels conda pour root
shell: "/opt/bin/conda config --add channels {{ item }}"
shell: "/var/lib/miniconda3/condabin/conda config --add channels {{ item }}"
become: yes
become_user: ubuntu
with_items:
......@@ -88,7 +88,7 @@
- name: installation des programmes via conda pour l'ensemble des utilisateurs
command: "/opt/bin/conda install {{ item }} -y --channel bioconda"
command: "/var/lib/miniconda3/condabin/conda install {{ item }} -y --channel bioconda"
with_items:
- fastqc
- sra-tools
......@@ -97,13 +97,13 @@
- name: creation de l'environnement myenv
shell: "/opt/bin/conda create -y --name myenv"
shell: "/var/lib/miniconda3/condabin/conda create -y --name myenv"
become: yes
become_user: ubuntu
- name: installation des package dans myenv pour l'utilisateur ubuntu
shell: "/opt/bin/conda install {{ item }} -y --channel bioconda --name myenv"
shell: "/var/lib/miniconda3/condabin/conda install {{ item }} -y --channel bioconda --name myenv"
# become: yes
# become_user: ubuntu
with_items:
......@@ -113,7 +113,7 @@
- quast
# - name: activation de l'environnement conda pour l'utilisateur root
# shell: "/opt/bin/conda init bash"
# shell: "/var/lib/miniconda3/condabin/conda init bash"
# become: yes
# become_user: ubuntu
......
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