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# AMPannotate
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Dependencies:
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* Nextflow (https://www.nextflow.io/)
* Docker (https://www.docker.com/)
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Command to run the pipeline:
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```bash
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nextflow run main.nf --pep_data protein_data --sp species (optionnal --fo output.csv)
```

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Command to get help:
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```bash
nextflow run main.nf --help
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```