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NAVRATIL VINCENT
shinyapps-virhostevol
Commits
c66a6cf2
Commit
c66a6cf2
authored
Oct 21, 2021
by
NAVRATIL VINCENT
Browse files
SARS-Cov-2 release - input format modification
parent
891d8903
Changes
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data/Bats_TMPRSS2_codonAln_prank.fas
data/Bats_TMPRSS2_codonAln_prank.fas
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data/Bats_TMPRSS2_codonAln_prank.phylip_phyml_tree.txt
data/Bats_TMPRSS2_codonAln_prank.phylip_phyml_tree.txt
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data/DGINN_202103062052_summary.tab
data/DGINN_202103062052_summary.tab
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data/Primates_TMPRSS2_codonAln_prank.fas
data/Primates_TMPRSS2_codonAln_prank.fas
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data/Primates_TMPRSS2_codonAln_prank.phylip_phyml_tree.txt
data/Primates_TMPRSS2_codonAln_prank.phylip_phyml_tree.txt
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-1
data/ZNF318_bat_AMLE.fasta
data/ZNF318_bat_AMLE.fasta
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-32
data/ZNF318_bat_AMLE.phylip_phyml_tree.txt
data/ZNF318_bat_AMLE.phylip_phyml_tree.txt
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data/Bats_TMPRSS2_codonAln_prank.fas
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data/Bats_TMPRSS2_codonAln_prank.phylip_phyml_tree.txt
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(rouAeg_TMPRSS2_XM_016134588:0.05626968,(pteAle_TMPRSS2_NM_001386133:0.00859853,pteVam_TMPRSS2_XM_023538199:0.01337738)0.999850:0.02316226,((rhiFer_TMPRSS2_XM_033088817:0.03274977,(hipArm_TMPRSS2_XM_019626040:0.01405727,hipArm_TMPRSS2_NW_017732334:0.04134221)0.999850:0.02273154)0.999850:0.02653049,((desRot_TMPRSS2_XM_024561824:0.05283153,(phyDis_TMPRSS2_XM_028504691:0.06183253,(stuHon_TMPRSS2_XM_037043001:0.02518806,artJam_TMPRSS2_XM_037144609:0.03025072)0.999850:0.01265798)0.999850:0.01805772)0.999850:0.06961405,(molMol_TMPRSS2_XM_036243106:0.07445678,(minNat_TMPRSS2_XM_016220949:0.07489686,((eptFus_TMPRSS2_XR_003619148:0.01627071,pipKuh_TMPRSS2_XM_036446834:0.07584755)0.999850:0.02245469,((myoDav_TMPRSS2_XM_006754330:0.01050701,myoMyo_TMPRSS2_XM_036350392:0.01268703)0.994946:0.00466736,(myoBra_TMPRSS2_XM_005885695:0.00360941,myoLuc_TMPRSS2_XM_006104440_XM_023746917:0.00721827)0.680516:0.00241590)0.999850:0.00893859)0.999850:0.04999729)0.478701:0.00599404)0.999850:0.01128858)0.999850:0.03116288)0.999850:0.06815320);
data/DGINN_202103062052_summary.tab
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File Name Gene GeneSize NbSpecies omegaM0Bpp omegaM0codeml BUSTED BUSTED_p-value MEME_NbSites MEME_PSS BppM1M2 BppM1M2_p-value BppM1M2_NbSites BppM1M2_PSS BppM7M8 BppM7M8_p-value BppM7M8_NbSites BppM7M8_PSS BppDFP07_0DFP07 BppDFP07_0DFP07_p-value BppDFP07_0DFP07_NbSites BppDFP07_0DFP07_PSS codemlM1M2 codemlM1M2_p-value codemlM1M2_NbSites codemlM1M2_PSS codemlM7M8 codemlM7M8_p-value codemlM7M8_NbSites codemlM7M8_PSS
Bats_TMPRSS2_codonAln_prank Bats TMPRSS2 496 17 0.11994443953570185779 0.124 na na 0 na N 0.9999980760140125 0 na Y 0.013540419403513491 2 364, 435 Y 0.01756110933912218 6 49, 216, 268, 364, 413, 435 N 1.0 0 na N 0.28365402649970844 0 na
Primates_TMPRSS2_codonAln_prank Primates TMPRSS2 563 28 0.33353462759989532804 0.306 na na 0 na Y 0.010104418438157323 2 224, 412 Y 2.9590581143453536e-05 5 224, 312, 315, 412, 500 Y 0.016719533826509363 42 78, 82, 83, 86, 89, 91, 108, 110, 115, 117, 124, 127, 140, 166, 169, 192, 224, 232, 253, 266, 302, 312, 313, 315, 316, 364, 375, 376, 378, 379, 412, 426, 430, 448, 453, 455, 460, 461, 500, 503, 519, 552 Y 4.265291637964482e-06 2 224, 412 Y 9.163844876377388e-09 5 224, 312, 315, 412, 500
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data/Primates_TMPRSS2_codonAln_prank.fas
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data/Primates_TMPRSS2_codonAln_prank.phylip_phyml_tree.txt
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(carSyr_TMPRSS2_XM_008068563:0.10498782,(otoGar_TMPRSS2_XM_023518095:0.12480530,(proCoq_TMPRSS2_XM_012640067:0.04867604,micMur_TMPRSS2_XM_012749836:0.10708347)0.999850:0.05038521)0.999850:0.04570907,((aotNan_TMPRSS2_XM_021669490:0.01652995,(calJac_TMPRSS2_XM_008986722:0.02477541,(saiBolBol_TMPRSS2_XM_003927595:0.02265989,(cebCapImi_TMPRSS2_XM_017538613:0.00500929,sapApe_TMPRSS2_XM_032276824:0.00341130)0.999850:0.01822206)0.954161:0.00222602)0.999850:0.00679087)0.999850:0.03721688,(((nomLeu_TMPRSS2_XM_003280394:0.00753261,hylMol_TMPRSS2_XM_032174256:0.00538577)0.999850:0.01464587,(ponAbe_TMPRSS2_XM_024239540:0.01688843,((gorGorGor_TMPRSS2_XM_004062839:0.00000001,gorGorGor_TMPRSS2_XM_019017901:0.00000001)0.999850:0.00730161,((homSap_potTMPRSS2_AK291813:0.00203948,(homSap_potTMPRSS2_AK296860:0.00074562,(homSap_TMPRSS2_AF329454:0.00078264,homSap_potTMPRSS2_U75329:0.00395940)0.993306:0.00135668)0.642405:0.00051088)0.999850:0.00348408,(panTro_TMPRSS2_XM_001172064:0.00287797,panPan_TMPRSS2_XM_003823903:0.00366881)0.999850:0.00325585)0.999850:0.00602644)0.999850:0.01012769)0.998372:0.00311564)0.999850:0.00767126,((pilTep_TMPRSS2_XM_023191879:0.01495455,(traFra_TMPRSS2_XM_033232531:0.00546825,(rhiBie_TMPRSS2_XM_017880225:0.00127629,rhiRox_TMPRSS2_XM_010354508:0.00186499)0.999850:0.00475472)0.999850:0.00495872)0.992504:0.00323405,((chlSab_TMPRSS2_XM_007968757:0.00000001,chlSab_TMPRSS2_XM_007968748:0.00000001)0.999850:0.01276860,((macFas_TMPRSS2_XM_005548643:0.00193949,(macNem_TMPRSS2_XM_011725990:0.00000001,macMul_TMPRSS2_XM_028845316:0.00319274)0.255730:0.00061313)0.999850:0.00802112,((papAnu_TMPRSS2_XM_009202216:0.00196540,theGel_TMPRSS2_XM_025380759:0.00792282)0.999850:0.00571288,(manLeu_TMPRSS2_XM_011984191:0.00695618,cerAty_TMPRSS2_XM_012037328:0.00978181)0.548752:0.00138968)0.999850:0.00247857)0.999850:0.00487056)0.999850:0.00737023)0.999850:0.02855582)0.999850:0.02333118)0.999850:0.03685660);
data/ZNF318_bat_AMLE.fasta
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data/ZNF318_bat_AMLE.phylip_phyml_tree.txt
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(XM_011354834:0.00157719,XM_015600260:0.00240822,(XM_016128506:0.01361053,((XM_033103521:0.03197661,XR_002124005:0.02428585)0.999850:0.01522639,((XM_024557889:0.01959986,(XM_028511095:0.02102910,(XM_037154281:0.01751506,XM_037053455:0.01815479)0.999850:0.00941194)0.999850:0.00401886)0.999850:0.02916657,(XM_036248855:0.03863051,(XM_016212661:0.03156496,(XM_036415359:0.03313243,((XM_006100605:0.00791515,XM_005861025:0.00346474)0.999850:0.00438787,(XM_036316928:0.00404601,XM_006776447:0.01503045)0.999850:0.00273656)0.999850:0.00904132)0.999850:0.02917948)0.996459:0.00336978)0.999850:0.00402107)0.999850:0.01183408)0.999850:0.02736169)0.999850:0.01142755);
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