Commit c66a6cf2 authored by NAVRATIL VINCENT's avatar NAVRATIL VINCENT
Browse files

SARS-Cov-2 release - input format modification

parent 891d8903
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(rouAeg_TMPRSS2_XM_016134588:0.05626968,(pteAle_TMPRSS2_NM_001386133:0.00859853,pteVam_TMPRSS2_XM_023538199:0.01337738)0.999850:0.02316226,((rhiFer_TMPRSS2_XM_033088817:0.03274977,(hipArm_TMPRSS2_XM_019626040:0.01405727,hipArm_TMPRSS2_NW_017732334:0.04134221)0.999850:0.02273154)0.999850:0.02653049,((desRot_TMPRSS2_XM_024561824:0.05283153,(phyDis_TMPRSS2_XM_028504691:0.06183253,(stuHon_TMPRSS2_XM_037043001:0.02518806,artJam_TMPRSS2_XM_037144609:0.03025072)0.999850:0.01265798)0.999850:0.01805772)0.999850:0.06961405,(molMol_TMPRSS2_XM_036243106:0.07445678,(minNat_TMPRSS2_XM_016220949:0.07489686,((eptFus_TMPRSS2_XR_003619148:0.01627071,pipKuh_TMPRSS2_XM_036446834:0.07584755)0.999850:0.02245469,((myoDav_TMPRSS2_XM_006754330:0.01050701,myoMyo_TMPRSS2_XM_036350392:0.01268703)0.994946:0.00466736,(myoBra_TMPRSS2_XM_005885695:0.00360941,myoLuc_TMPRSS2_XM_006104440_XM_023746917:0.00721827)0.680516:0.00241590)0.999850:0.00893859)0.999850:0.04999729)0.478701:0.00599404)0.999850:0.01128858)0.999850:0.03116288)0.999850:0.06815320);
File Name Gene GeneSize NbSpecies omegaM0Bpp omegaM0codeml BUSTED BUSTED_p-value MEME_NbSites MEME_PSS BppM1M2 BppM1M2_p-value BppM1M2_NbSites BppM1M2_PSS BppM7M8 BppM7M8_p-value BppM7M8_NbSites BppM7M8_PSS BppDFP07_0DFP07 BppDFP07_0DFP07_p-value BppDFP07_0DFP07_NbSites BppDFP07_0DFP07_PSS codemlM1M2 codemlM1M2_p-value codemlM1M2_NbSites codemlM1M2_PSS codemlM7M8 codemlM7M8_p-value codemlM7M8_NbSites codemlM7M8_PSS
Bats_TMPRSS2_codonAln_prank Bats TMPRSS2 496 17 0.11994443953570185779 0.124 na na 0 na N 0.9999980760140125 0 na Y 0.013540419403513491 2 364, 435 Y 0.01756110933912218 6 49, 216, 268, 364, 413, 435 N 1.0 0 na N 0.28365402649970844 0 na
Primates_TMPRSS2_codonAln_prank Primates TMPRSS2 563 28 0.33353462759989532804 0.306 na na 0 na Y 0.010104418438157323 2 224, 412 Y 2.9590581143453536e-05 5 224, 312, 315, 412, 500 Y 0.016719533826509363 42 78, 82, 83, 86, 89, 91, 108, 110, 115, 117, 124, 127, 140, 166, 169, 192, 224, 232, 253, 266, 302, 312, 313, 315, 316, 364, 375, 376, 378, 379, 412, 426, 430, 448, 453, 455, 460, 461, 500, 503, 519, 552 Y 4.265291637964482e-06 2 224, 412 Y 9.163844876377388e-09 5 224, 312, 315, 412, 500
\ No newline at end of file
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(carSyr_TMPRSS2_XM_008068563:0.10498782,(otoGar_TMPRSS2_XM_023518095:0.12480530,(proCoq_TMPRSS2_XM_012640067:0.04867604,micMur_TMPRSS2_XM_012749836:0.10708347)0.999850:0.05038521)0.999850:0.04570907,((aotNan_TMPRSS2_XM_021669490:0.01652995,(calJac_TMPRSS2_XM_008986722:0.02477541,(saiBolBol_TMPRSS2_XM_003927595:0.02265989,(cebCapImi_TMPRSS2_XM_017538613:0.00500929,sapApe_TMPRSS2_XM_032276824:0.00341130)0.999850:0.01822206)0.954161:0.00222602)0.999850:0.00679087)0.999850:0.03721688,(((nomLeu_TMPRSS2_XM_003280394:0.00753261,hylMol_TMPRSS2_XM_032174256:0.00538577)0.999850:0.01464587,(ponAbe_TMPRSS2_XM_024239540:0.01688843,((gorGorGor_TMPRSS2_XM_004062839:0.00000001,gorGorGor_TMPRSS2_XM_019017901:0.00000001)0.999850:0.00730161,((homSap_potTMPRSS2_AK291813:0.00203948,(homSap_potTMPRSS2_AK296860:0.00074562,(homSap_TMPRSS2_AF329454:0.00078264,homSap_potTMPRSS2_U75329:0.00395940)0.993306:0.00135668)0.642405:0.00051088)0.999850:0.00348408,(panTro_TMPRSS2_XM_001172064:0.00287797,panPan_TMPRSS2_XM_003823903:0.00366881)0.999850:0.00325585)0.999850:0.00602644)0.999850:0.01012769)0.998372:0.00311564)0.999850:0.00767126,((pilTep_TMPRSS2_XM_023191879:0.01495455,(traFra_TMPRSS2_XM_033232531:0.00546825,(rhiBie_TMPRSS2_XM_017880225:0.00127629,rhiRox_TMPRSS2_XM_010354508:0.00186499)0.999850:0.00475472)0.999850:0.00495872)0.992504:0.00323405,((chlSab_TMPRSS2_XM_007968757:0.00000001,chlSab_TMPRSS2_XM_007968748:0.00000001)0.999850:0.01276860,((macFas_TMPRSS2_XM_005548643:0.00193949,(macNem_TMPRSS2_XM_011725990:0.00000001,macMul_TMPRSS2_XM_028845316:0.00319274)0.255730:0.00061313)0.999850:0.00802112,((papAnu_TMPRSS2_XM_009202216:0.00196540,theGel_TMPRSS2_XM_025380759:0.00792282)0.999850:0.00571288,(manLeu_TMPRSS2_XM_011984191:0.00695618,cerAty_TMPRSS2_XM_012037328:0.00978181)0.548752:0.00138968)0.999850:0.00247857)0.999850:0.00487056)0.999850:0.00737023)0.999850:0.02855582)0.999850:0.02333118)0.999850:0.03685660);
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(XM_011354834:0.00157719,XM_015600260:0.00240822,(XM_016128506:0.01361053,((XM_033103521:0.03197661,XR_002124005:0.02428585)0.999850:0.01522639,((XM_024557889:0.01959986,(XM_028511095:0.02102910,(XM_037154281:0.01751506,XM_037053455:0.01815479)0.999850:0.00941194)0.999850:0.00401886)0.999850:0.02916657,(XM_036248855:0.03863051,(XM_016212661:0.03156496,(XM_036415359:0.03313243,((XM_006100605:0.00791515,XM_005861025:0.00346474)0.999850:0.00438787,(XM_036316928:0.00404601,XM_006776447:0.01503045)0.999850:0.00273656)0.999850:0.00904132)0.999850:0.02917948)0.996459:0.00336978)0.999850:0.00402107)0.999850:0.01183408)0.999850:0.02736169)0.999850:0.01142755);
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