Commit c69d4780 authored by NAVRATIL VINCENT's avatar NAVRATIL VINCENT
Browse files

add doi information

parent 70898fe0
......@@ -21,5 +21,5 @@ colnames_full <- c("File","Name","Gene","Description","GeneSize","NbSpecies","om
#define root_clades
root_clade_bats <- "meglyr|rhiSin|rhiFer|hipArm|hipRub|eidHel|rouAeg|pteAle|pteVam"
#root_clade_primates <- "eulRuf|eulCol|eulFul|eulSan|eulAlb|eulMon|eulMac|eulCor|eulRub|hapOcc|hapGri|lemCat|varVar|lepSep|lepAnk|lepDor|lepRuf|lepJam|micMur|mirZaz|cheMed|proVer|proTat|proDia|proEdw|avaLan|dauMad|nycBen|nycCou|nycPyg|lorTar|arcCal|perPot|galSen|galMoh|otoGar|otoCra|galTho|galVar|cynVol|tupGli|tupMin"
root_clade_primates <- "nycBen|nycCou|nycPyg|lorTar|arcCal|perPot|galSen|galMoh|otoGar|otoCra|galTho|galVar|cynVol|tupGli|tupMin"
root_clade_primates <- "proVer|proTat|proDia|proEdw|avaLan|dauMad|nycBen|nycCou|nycPyg|lorTar|arcCal|perPot|galSen|galMoh|otoGar|otoCra|galTho|galVar|cynVol|tupGli|tupMin"
root_clades <- paste(root_clade_bats,root_clade_primates,sep="|")
\ No newline at end of file
......@@ -25,7 +25,7 @@ shinyUI(
fluidRow(
column(12,
tags$div(class="header", checked=NA,
HTML('<br><br>This is the online supplmentary material of the manuscript entitled <b>"Distinct evolutionary trajectories of SARS-CoV-2 interacting proteins in bats and primates identify host determinants of COVID-19"</b> by Cariou et al. (doi:// to come).<br><br>The <b>"Genes of focus "</b> is the result of a curated and enriched analysis of genes of interest. A visualization of corresponding alignments, phylogenetic trees and results of positively selection analyses (genes and sites), as well as links to download original files, are provided. <br><br>The <b>"DGINN full dataset"</b> is the result of the automated screens of positive selection on SARS-CoV-2 interacting proteins. When selecting/clicking on a gene, a visualization of corresponding alignments, phylogenetic trees and results of positive selection analyses (genes and sites), as well as links to download original files, are provided. <br><br>Bats and primates species tree used in this study are available for download [<a href="./data/bats_sp.tree">bats_species.tree</a>] and [<a href="./data/primates_sp.tree">primates_species.tree</a>] ')
HTML('<br><br>This is the online supplementary material of the manuscript entitled <b>"Distinct evolutionary trajectories of SARS-CoV-2 interacting proteins in bats and primates identify host determinants of COVID-19"</b> by Cariou et al. (https://doi.org/10.1101/2022.04.07.487460).<br><br>The <b>"Genes of focus "</b> is the result of a curated and enriched analysis of genes of interest. A visualization of corresponding alignments, phylogenetic trees and results of positively selection analyses (genes and sites), as well as links to download original files, are provided. <br><br>The <b>"DGINN full dataset"</b> is the result of the automated screens of positive selection on SARS-CoV-2 interacting proteins. When selecting/clicking on a gene, a visualization of corresponding alignments, phylogenetic trees and results of positive selection analyses (genes and sites), as well as links to download original files, are provided. <br><br>Bats and primates species tree used in this study are available for download [<a href="./data/bats_sp.tree">bats_species.tree</a>] and [<a href="./data/primates_sp.tree">primates_species.tree</a>] ')
)
)
),
......
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