Commit 4e957c83 authored by Plaszczynski Stephane's avatar Plaszczynski Stephane
Browse files

improve req

parent aacd8a7b
package CAMEL
#THE FOLLWING LINKS TO YOUR CLASS LIBRARY- YOU CAN TEST WHICH ONE IN YOUR
#SHELL WITH THE FOLLWING COMMAND : cmt show uses
# you may put an explicit version instead of * (as v2.4.4 or v2.*...)
use class *
#CLASS optional FastPk access
#macro_append cppflags " -DFASTPK "
#COMPILER - TO EASE PAIN USE THE SAME THAN FOR CLASS/CLIK COMPILATION
# DEFAULT IS gcc SO DO NOT UNCOMMENT IF YOUR ARE HAPPY WITH THIS (EXAMPLE FOR CHANGING TO ICPC)
#macro cpp "icpc"
#compiler options
#default is gcc here are the C++ compiler options
macro cppflags " -O3 -pipe -ansi -fPIC -Wall "
#COMPILER FLAGS for default=gcc
#C++ flags
macro cppflags " -O2 -pipe -ansi -Woverloaded-virtual -Wpedantic -Wunused -Wmaybe-uninitialized -Wno-deprecated -Wno-div-by-zero -Wno-variadic-macros"
# C flags
macro_append cpplinkflags " -fopenmp "
# or for icpc (if you changed previously the compiler otherwise don't touch)
#macro cppflags " -O2 -ip -ansi_alias -align -Wbrief "
#do we need optimzations here?
#macro_append cppflags "-ffast-math -m64 "
#
# CFITSIO IS REQUIRED.
# include_dirs indicates the path to fitsio.h/ and CAMEL_linkopts teh
# link to the propoer library. In the following we use the one that was
# compiled when building CLIK but it can be also found
# in your /usr area. If the library is shared you may need to update your
# LD_LIBRARY_PATH or uncomment the next line before sourcing camel_setup.sh
#path_append LD_LIBRARY_PATH "$(CLIKDIR)/lib"
# although it may be strange we do not compile CAMEL with OMP because CLASS is not thread safe
# no worries: CLASS is compiled with OMP
#macro_append cppflags "-fopenmp "
macro_append cpplinkflags " -fopenmp "
include_dirs "$(CLIKDIR)/include"
macro_append CAMEL_linkopts " -L$(CLIKDIR)/lib -lcfitsio"
#CAMEL includes
include_dirs " $(CAMELROOT)/src"
include_dirs " $(CAMELROOT)/src/camel"
include_dirs " $(CAMELROOT)/src/Minuit2-5.28.00/src"
include_dirs " $(CAMELROOT)/src/Minuit2-5.28.00/inc"
include_dirs "$(CAMELROOT)/src/cxxsupport"
include_dirs "$(CAMELROOT)/src/AbsRand"
include_dirs "$(CAMELROOT)/src/camel/JLA"
include_dirs "$(CAMELROOT)/src/camel/JLA/jla_likelihood_v3/src"
#cfitsio
include_dirs "/usr/include/cfitsio"
macro_append CAMEL_linkopts " -lcfitsio"
#JLA :requires cblas/lapack
#macro_append cppflags ' -DJLA '
#include_dirs "/usr/include/atlas"
#macro_append CAMEL_linkopts " -L/usr/lib64/atlas -ltatlas -llapack -ljla "
#application test_jla -group=test -s=$(CAMELROOT)/src/camel test/test_jla.cc
#library jla -no_share $(CAMELROOT)/src/camel/JLA/jla_likelihood_v3/src/ini.c $(CAMELROOT)/src/camel/JLA/jla_likelihood_v3/src/jla.cc
# PLANCK CLIK support [optional]
# NB: you always have access to PLanck/Hillipop (high-ell) likelihood since
# it is native in CAMEL.
# CLIKCFLAGS and CLIKLIBS were defined when you ran: camel_setup.sh
#PLANCK
#macro_append cppflags " -DCLIK $(CLIKCFLAGS)"
#macro_append cflags " -DCLIK $(CLIKCFLAGS)"
#macro_append CAMEL_linkopts " $(CLIKLIBS) "
#include_dirs "$(CLIKDIR)/include"
#include_dirs "$(CLIKDIR)/src"
#macro_append cppflags " -DCLIK "
#macro_append cflags " -DCLIK "
#macro_append CAMEL_linkopts "-L$(CLIKDIR)/lib -lclik "
#application dump_clik -group=test -s=../src/camel test/test_clik.cc
#application dump_lensing -group=test -s=../src/camel test/test_lensing.cc
#JLA [optional] :requires cblas/lapack
# in most linux distributions packaged with the atlas library.
# if you installed CLIK you may also look for them in teh MKLROOT you used.
# macro_append cppflags ' -DJLA '
#include_dirs "/usr/include/atlas"
#macro_append CAMEL_linkopts " -L/usr/lib64/atlas -lcblas -llapack -ljla "
#application test_jla -group=test -s=../src/camel test/test_jla.cc
#path_append LD_LIBRARY_PATH "$(CLIKDIR)/lib"
#application dump_clik -group=test -s=$(CAMELROOT)/src/camel test/test_clik.cc
#application dump_lensing -group=test -s=$(CAMELROOT)/src/camel test/test_lensing.cc
# PICO [optional]
# PICO
#macro_append cppflags " -DPICO $(PICOINC) "
#macro_append CAMEL_linkopts " -L$(PICO_CODE) -lpico -lpython2.7 "
# if the previous link fails try using the PICOLIBS defined in camel_setup.sh
# the previous line should be sufficient otherwise try the PICOLIBS
# (set in camel_setup.sh)
#macro_append CAMEL_linkopts " $(PICOLIBS)"
#macro_append cppflags ' -DPICODATA=\"$(PICO_DATA)\" '
#application testPico -group=test -s=../src/camel/pico/exec testPico.cc
#application testPico -group=test -s=$(CAMELROOT)/src/camel/pico/exec testPico.cc
#macro_append cppflags " -DPICO "
#include_dirs "/usr/include/python2.7"
#include_dirs "/usr/lib64/python2.7/site-packages/numpy/core/include"
#include_dirs "$(PICO_CODE)/pypico"
#macro_append CAMEL_linkopts " -L$(PICO_CODE)/build/temp.linux-x86_64-2.7 -lpico -L/usr/lib64/python2.7/config -lpython2.7 "
#macro_append cppflags ' -DPICODATA=\"$(PICO_DATA)\" '
#application testPico -group=test -s=../src/camel/pico/exec testPico.cc
#application FitClassFromPico -group=exec -s=../src/camel exec/FitClassFromPico.cc
###########################################################################################
###FROM THERE YOU SHOUL NOT NEED TO TOUCH ANYTHING
###########################################################################################
#CAMEL includes
include_dirs " ../src"
include_dirs "../src/camel"
include_dirs "../src/Minuit2-5.28.00/src"
include_dirs "../src/Minuit2-5.28.00/inc"
include_dirs "../src/cxxsupport"
include_dirs "../src/AbsRand"
include_dirs "../src/camel/JLA"
include_dirs "../src/camel/JLA/jla_likelihood_v3/src"
###FROM THERE YOU DONT NEED TO TOUCH
###########################################################################################
#CAMEL LIBRARIES
library Minuit -no_share ../src/Minuit2-5.28.00/src/*.cxx
library Util -no_share -x=ddl.cc ../src/cxxsupport/*.cc
library AbsRand -no_share ../src/AbsRand/*.cc
library CLHEP -no_share ../src/CLHEP/src/*.cc
library jla -no_share ../src/camel/JLA/jla_likelihood_v3/src/ini.c ../src/camel/JLA/jla_likelihood_v3/src/jla.cc
library Minuit -no_share $(CAMELROOT)/src/Minuit2-5.28.00/src/*.cxx
library Util -no_share -x=ddl.cc $(CAMELROOT)/src/cxxsupport/*.cc
library AbsRand -no_share $(CAMELROOT)/src/AbsRand/*.cc
library CLHEP -no_share $(CAMELROOT)/src/CLHEP/src/*.cc
macro camelsrc "*.cc CMB/*.cc BAO/*.cc Lensing/*.cc pico/*.cc JLA/*.cc Class/*.cc Constraints/*.cc"
library MinuitFit -no_share -s=../src/camel $(camelsrc)
library MCMC -no_share -s=../src/camel/MCMC *.cc
macro camelsrc "*.cc CMB/*.cc BAO/*.cc Lensing/*.cc pico/*.cc JLA/*.cc Class/*.cc Constraints/*.cc Pk/*.cc"
library MinuitFit -no_share -s=$(CAMELROOT)/src/camel $(camelsrc)
library MCMC -no_share -s=$(CAMELROOT)/src/camel/MCMC *.cc
macro CAMEL_linkopts "-L$(CAMEL_root)/${CMTCONFIG} -lMinuitFit -lMinuit -lMCMC -lCLHEP -lAbsRand -lUtil "
macro CAMEL_linkopts "-L$(CAMELROOT)/${CMTCONFIG} -lMinuitFit -lMinuit -lMCMC -lCLHEP -lAbsRand -lUtil "
macro_append cppflags ' -DRELPATH=\"$(CAMELROOT)/lik\" '
#CAMEL applications
# pour relinker si changement: toutes les application du package
macro CAMEL_stamps $(PACKAGE_ROOT)/$(CMTCONFIG)/MinuitFit.stamp
macro CAMEL_stamps " $(CAMELROOT)/$(CMTCONFIG)/MinuitFit.stamp $(CAMELROOT)/$(CMTCONFIG)/MCMC.stamp "
macro application_suffix ""
#groupe exec: to build run: make exec
application writeChi2 -group=exec -s=../src/camel exec/writeChi2.cc
application writeSpectra -group=exec -s=../src/camel exec/writeSpectra.cc
application Minimize -group=exec -s=../src/camel exec/Minimize.cc
application ScanParam -group=exec -s=../src/camel exec/ScanParam.cc
application mcmc -group=exec -s=../src/camel/MCMC exec/mainMCMC.cc
#groupe exec
application writeChi2 -group=exec -s=$(CAMELROOT)/src/camel exec/writeChi2.cc
application writeSpectra -group=exec -s=$(CAMELROOT)/src/camel exec/writeSpectra.cc
application writeSpectraPk -group=exec -s=$(CAMELROOT)/src/camel exec/writeSpectraPk.cc
application Minimize -group=exec -s=$(CAMELROOT)/src/camel exec/Minimize.cc
application Profile -group=exec -s=$(CAMELROOT)/src/camel exec/Profile.cc
application ScanParam -group=exec -s=$(CAMELROOT)/src/camel exec/ScanParam.cc
application mcmc -group=exec -s=$(CAMELROOT)/src/camel/MCMC exec/mainMCMC.cc
#tests
application testKlass -group=test -s=../src/camel test/testKlass.cc
application testCLHEP -group=test -s=../src/camel/test testCLHEP.cc
application testBAO -group=test -s=../src/camel/test testBAO.cc
application testHiLLiPOP -group=test -s=../src/camel/test testHiLLiPOP.cc
application testKlass -group=test -s=$(CAMELROOT)/src/camel test/testKlass.cc
application testCLHEP -group=test -s=$(CAMELROOT)/src/camel/test testCLHEP.cc
application testBAO -group=test -s=$(CAMELROOT)/src/camel/test testBAO.cc
application testHiLLiPOP -group=test -s=$(CAMELROOT)/src/camel/test testHiLLiPOP.cc
#lIST OF ALL DEPENDENCIES
macro_append Minimize_dependencies " MinuitFit "
macro_append Profile_dependencies " MinuitFit "
macro_append ScanParam_dependencies " MinuitFit "
macro_append writeChi2_dependencies " MinuitFit "
macro_append writeSpectra_dependencies " MinuitFit "
macro_append mcmc_dependencies " MinuitFit MCMC"
macro_append writeSpectraPkependencies " MinuitFit "
macro_append mcmc_dependencies " MinuitFit "
macro_append mcmc_dependencies " MCMC "
macro_append testKlass_dependencies " MinuitFit"
macro_append clik_example_CC_dependencies " MinuitFit "
macro_append test_clik_dependencies " MinuitFit "
......@@ -131,5 +119,4 @@ macro_append testCLHEP_dependencies " CLHEP "
macro_append testBAO_dependencies " MinuitFit "
macro_append testHiLLiPOP_dependencies " MinuitFit "
macro_append test_jla_dependencies " MinuitFit "
macro_append testPico_dependencies " MinuitFit "
......@@ -232,11 +232,11 @@ int main(int argc,char** argv){
Timer timer;
cout <<"Pk timer test..." << endl;
vector<double> pkvec(kval.size());
for (size_t i=0;i<1000;i++)
for (size_t i=0;i<100;i++)
e->get_Pkvec(kval,z0,pkvec);
cout << "fast=" << timer.partial() <<endl;
for (size_t i=0;i<1000;i++){
for (size_t i=0;i<100;i++){
for (int k =0; k<kval.size() ; k++){
double pk=e->get_Pklin(kval[k], 0);
}
......
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