Commit ae3084b2 authored by Matthieu Tristram's avatar Matthieu Tristram
Browse files

Add camel python library

Add lib path into PYTHON path
parent 1ae5c439
#
#CAMEL tools library
#
#Sep 2015 - M. Tristram -
from numpy import *
def cov2cor( mat):
cor = mat.copy()
for i in range( len(mat)):
for j in range( len(mat)):
cor[i,j] = mat[i,j]/sqrt(mat[i,i]*mat[j,j])
return(cor)
def extract_bestfit( dirname):
f = open( dirname, 'r')
param = array( f.readline().replace('\n','').split('\t'), dtype=str)
value = array( f.readline().replace('\t',' ').split(' '), dtype=double)
f.close()
return( param,value)
# bestfit = dict(zip(param, value))
# return( bestfit)
def extract_hess( filename, ext="MnUserCovariance", reverse=False):
f = open( filename, 'r')
lines=f.readlines()
f.close()
npar = 0
par = []
for l in lines:
if l.startswith('par\t'):
npar = npar + 1
par.append( l.split("\t")[1])
print( "number of parameter : %d/%d" % (npar,len(par)))
if reverse:
lines.reverse()
index = 0
while not lines[index].startswith(ext):
index = index+1
print(index)
while lines[index] == "\n" or lines[index] == "":
index = index+1
cov=[]
for n in range(npar):
cov.append([v for v in lines[index+2+n].replace("\n","").split(" ") if v != ""])
n = len(cov[0])
mat = zeros( (n,n))
for i in range(n):
mat[i,:] = array(cov[i])
if reverse:
mat = flipud(mat)
return(mat,par)
def mergeMC( filename, burnin=0.9, num=(1,2,3,4), ext="txt"):
for n in range(0,len(num)):
tmp = loadtxt( "%s%d.%s" % (filename,num[n],ext), skiprows=1)
if 0 < burnin < 1:
ist = burnin*len(tmp)
else:
ist = burnin
if n == 0:
chain = tmp[ist:,:]
else:
chain = concatenate((chain,tmp[ist:,:]),axis=0)
f = open( "%s%d.%s" % (filename,num[0],ext))
par = [v for v in f.readline().replace("\n","").split("\t") if v != ""]
return(chain,par)
def scan(filename):
f = open( filename, 'r')
l=f.readlines()
f.close()
index=0
while not l[index].startswith("SCANNING PAR"):
index = index+1
print(l[index].replace("\n",""))
while not l[index].startswith("it "):
index = index+1
par = [v.strip() for v in l[index].replace("\n","").split("|") if v != ""]
index = index + 1
scan = []
while not l[index].startswith("===="):
scan.append( [v for v in l[index].replace("\n","").split("\t") if v != ""])
index = index + 1
return( scan,par)
#expand given mat with the given parameters on the diag
def expand_cov( mat, par, newpar, newvar):
match = [newpar.index(i) for i in newpar if i in par]
notmatch = [newpar.index(i) for i in newpar if i not in par]
sz = len(newpar)
newmat = zeros( (sz, sz))
for i in match:
for j in match:
newmat[i,j] = mat[par.index(newpar[i]),par.index(newpar[j])]
for i in notmatch:
newmat[i,i] = newvar[i]
return( newmat)
def extract_chains( chainame, nchain, begin=0, end=-1):
imin = begin
imax = end
for c in range(0,nchain):
print( "%s%d.txt" % (chainame,c+1))
tmp = loadtxt( "%s%d.txt" % (chainame,c+1), skiprows=1)
nsamples,npar = shape(tmp)
if imax < 0:
imax = nsamples
nele = (imax-imin)
if c == 0:
chain = zeros( (nchain, npar, nele))
chain[c,:,:] = tmp[imin:imax,:].T
f = open( "%s%d.txt" % (chainame,0))
par = [v for v in f.readline().replace("\n","").split("\t") if v != ""]
return(chain,par)
#GR test
def GR( chainame, gap=10000, length_max=-1):
nchain=4
length_min = 50
chain = extract_chains( chainame, nchain)
bla,npar,nsamples = shape(chain)
if length_max == -1:
length_max = nsamples
nele = (length_max-length_min)/gap+1
index_event = 0
R = zeros( (nele, npar))
for index in range(length_min,length_max,gap):
burnin = index/2
mchain = mean( chain[:,:,burnin:index],2)
schain = var( chain[:,:,burnin:index],2)
B_n = var( mchain,0)
W = mean( schain,0)
R[index_event,:] = ( (index-1.)/index*W + B_n*(1.+1./nchain) )/W
index_event = index_event + 1
return(R)
########################################################################
parname = {
'omega_b' : '$\\Omega_\mathrm{b}$',
'omega_cdm' : '$\\Omega_\mathrm{cdm}$',
'100*theta_s' : '$100\\theta_\mathrm{s}$',
'tau_reio' : '$\\tau$',
'z_reio' : '$\mathrm{z}_\mathrm{reio}$',
'n_s' : '$\mathrm{n}_\mathrm{s}$',
'log(10^10A_s)' : '$log(10^{10}A_\mathrm{s})$',
'A_planck' : '$A_\mathrm{planck}$',
'A_cib_217' : '$A_\mathrm{CIB}^{217}$',
'xi_sz_cib' : '$\\xi_\mathrm{SZxCIB}$',
'A_sz' : '$A_\mathrm{SZ}$',
'ps_A_100_100' : '$A_\mathrm{PS}^\mathrm{Planck}\mathrm{(100)}$',
'ps_A_143_143' : '$A_\mathrm{PS}^\mathrm{Planck}\mathrm{(143)}$',
'ps_A_217_217' : '$A_\mathrm{PS}^\mathrm{Planck}\mathrm{(217)}$',
'ps_A_143_217' : '$A_\mathrm{PS}^\mathrm{Planck}\mathrm{(143x217)}$',
'ksz_norm' : '$A_\mathrm{kSZ}$',
'gal545_A_100' : '$A_\mathrm{gal545}^\mathrm{100}$',
'gal545_A_143' : '$A_\mathrm{gal545}^\mathrm{143}$',
'gal545_A_143_217' : '$A_\mathrm{gal545}^\mathrm{143x217}$',
'gal545_A_217' : '$A_\mathrm{gal545}^\mathrm{217}$',
'calib_100T' : '$c^\mathrm{Planck}_{100}$',
'calib_217T' : '$c^\mathrm{Planck}_{217}$',
'c0' : '$c^\mathrm{Planck}_\mathrm{100hm1}$',
'c1' : '$c^\mathrm{Planck}_\mathrm{100hm2}$',
'c2' : '$c^\mathrm{Planck}_\mathrm{143hm1}$',
'c3' : '$c^\mathrm{Planck}_\mathrm{143hm2}$',
'c4' : '$c^\mathrm{Planck}_\mathrm{217hm1}$',
'c5' : '$c^\mathrm{Planck}_\mathrm{217hm2}$',
'Aps100x100' : '$A_\mathrm{PS}^\mathrm{Planck}\mathrm{(100x100)}$',
'Aps100x143' : '$A_\mathrm{PS}^\mathrm{Planck}\mathrm{(100x143)}$',
'Aps100x217' : '$A_\mathrm{PS}^\mathrm{Planck}\mathrm{(100x217)}$',
'Aps143x143' : '$A_\mathrm{PS}^\mathrm{Planck}\mathrm{(143x143)}$',
'Aps217x217' : '$A_\mathrm{PS}^\mathrm{Planck}\mathrm{(217x217)}$',
'Aps143x217' : '$A_\mathrm{PS}^\mathrm{Planck}\mathrm{(143x217)}$',
'Asz' : '$A_\mathrm{SZ}$',
'Acib' : '$A_\mathrm{CIB}$',
'Aksz' : '$A_\mathrm{kSZ}$',
'Aszxcib' : '$A_\mathrm{SZxCIB}$',
'AdustTT' : '$A_\mathrm{dust}^\mathrm{TT}$',
'AdustTE' : '$A_\mathrm{dust}^\mathrm{TE}$',
'AdustEE' : '$A_\mathrm{dust}^\mathrm{EE}$',
'SPT_high_95_cal' : '$c^\mathrm{SPT\ high}_{95}$',
'SPT_high_150_cal' : '$c^\mathrm{SPT\ high}_{150}$',
'SPT_high_220_cal' : '$c^\mathrm{SPT\ high}_{220}$',
'SPT_high_Aps_95x95' : '$A_{PS}^\mathrm{SPT\ high}\mathrm{(95x95)}$',
'SPT_high_Aps_95x150' : '$A_{PS}^\mathrm{SPT\ high}\mathrm{(95x150)}$',
'SPT_high_Aps_95x220' : '$A_{PS}^\mathrm{SPT\ high}\mathrm{(95x220)}$',
'SPT_high_Aps_150x150' : '$A_{PS}^\mathrm{SPT\ high}\mathrm{(150x150)}$',
'SPT_high_Aps_150x220' : '$A_{PS}^\mathrm{SPT\ high}\mathrm{(150x220)}$',
'SPT_high_Aps_220x220' : '$A_{PS}^\mathrm{SPT\ high}\mathrm{(220x220)}$',
'SPT_low_Aps' : '$A_{PS}^\mathrm{SPT\ low}$',
'SPT_low_cal' : '$c^\mathrm{SPT\ low}$',
'ACT_equat_148_cal' : '$c^\mathrm{ACT\ equat}_{148}$',
'ACT_equat_220_cal' : '$c^\mathrm{ACT\ equat}_{220}$',
'ACT_equat_ADust' : '$A_\mathrm{dust}^\mathrm{ACT\ equat}$',
'ACT_equat_Aps_148x148' : '$A_{PS}^\mathrm{ACT\ equat}\mathrm{(148x148)}$',
'ACT_equat_Aps_148x220' : '$A_{PS}^\mathrm{ACT\ equat}\mathrm{(148x220)}$',
'ACT_equat_Aps_220x220' : '$A_{PS}^\mathrm{ACT\ equat}\mathrm{(220x220)}$',
'ACT_south_148_cal' : '$c^\mathrm{ACT\ south}_{148}$',
'ACT_south_220_cal' : '$c^\mathrm{ACT\ south}_{220}$',
'ACT_south_ADust' : '$A_\mathrm{dust}^\mathrm{ACT\ south}$',
'ACT_south_Aps_148x148' : '$A_{PS}^\mathrm{ACT\ south}\mathrm{(148x148)}$',
'ACT_south_Aps_148x220' : '$A_{PS}^\mathrm{ACT\ south}\mathrm{(148x220)}$',
'ACT_south_Aps_220x220' : '$A_{PS}^\mathrm{ACT\ south}\mathrm{(220x220)}$',
'chi2' : '$\\chi^2$'
}
#COBESIX specific
export PYTHONPATH=${PICO_CODE}:$PYTHONPATH
......@@ -37,3 +36,5 @@ fi
cmt show uses
#too see details during compilation uncomment
#export VERBOSE=1
export PYTHONPATH=${CAMELROOT}/batch/python:$PYTHONPATH
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plikTT_Comm_lol_2bins.covmat
\ No newline at end of file
engine=class
par omega_b cosm 0.02222376723739 0.00027 0.017 0.027
par omega_cdm cosm 0.1200286571954 0.0026 0.09 0.15
par 100*theta_s cosm 1.041751381289 0.6E-04 1.0170 1.0617
par n_s cosm 0.9636595316984 0.0070 0.9 1.1
par log(10^10A_s) cosm 3.053397437966 0.025 2.7 3.5
par reio_z_mid cosm 7.175583322925 0.05 3.51 14.5
par reio_f_z_10 cosm 0.1918821502614 0.05 0.01 0.99
par A_planck nui 1.000321034302 0.01 0.9 1.1 #ycal
####################################################
#LIKELIHOOD
#COMMANDER
clikfile=/afs/in2p3.fr/group/planck/plaszczy/clik_10.3/low_l/commander/commander_rc2_v1.1_l2_49_B.clik
#Lollipop
Lollipop=/Lollipop/lollipop.lal
#Plik
clikfile2=/afs/in2p3.fr/group/planck/plaszczy/clik_10.3/hi_l/plik/plik_dx11dr2_HM_v18_TT.clik
par calib_100T nui 0.9978995142181 .2 0 3 #c100
par calib_217T nui 0.9962145810116 .2 0 3 #c217
par A_cib_217 nui 69.11249322756 1 0 200 #Acib217
par xi_sz_cib nui 0.002761908133493 .01 0 1 #xi_sz_cib
par A_sz nui 7.056346482883 1 0 10 #Atsz143
par ps_A_100_100 nui 257.8843745151 10 0 400 #Aps100
par ps_A_143_143 nui 43.37832691814 1 0 400 #Aps143
par ps_A_143_217 nui 35.08974437469 1 0 400 #Aps143x217
par ps_A_217_217 nui 97.53471776416 1 0 400 #Aps217
par ksz_norm nui 0.0007746034220424 1 0 10 #Aksz
par gal545_A_100 nui 7.440924459903 .2 0 50 #AdustTT100
par gal545_A_143 nui 9.033359232257 9.41 0 50 #AdustTT143
par gal545_A_143_217 nui 18.1249679009 19.69 0 100 #AdustTT143x217
par gal545_A_217 nui 82.07604331277 82.4 0 100 #AdustTT217
fix cib_index nui -1.3 .2 -5 5 #ncib
####################################################
####################################################
#PRIOR
gausssum2 A_sz ksz_norm 1.6 1. 9.5 3
gauss1 calib_100T 0.9990004 0.001
gauss1 calib_217T 0.99501 0.002
gauss1 gal545_A_100 7 2
gauss1 gal545_A_143 9 2
gauss1 gal545_A_143_217 21 8.5
gauss1 gal545_A_217 80 20
gauss1 A_planck 1 0.0025
####################################################
####################################################
#CLASS setup
class reio_parametrization reio_two_stage
class reio_z_end 3.5
class reio_z_begin 20.
class reio_f_xe_mid 0.9999
class reio_f_z_90 0.0
class helium_fullreio_z_start 3.5 #5. (default)
class helium_fullreio_delta_z 1.5 #3. (default)
# 1 neutrino massif degenere
class N_ncdm 1
class m_ncdm 0.06
class N_eff 2.046
class k_pivot 0.05
class lensing yes
class sBBN\ file /afs/in2p3.fr/group/planck/plaszczy/class/bbn/sBBN.dat
precisionFile=hpjul2.pre
####################################################
####################################################
#fitter
nitermax=50000
set_stra=2
set_tol=0.00001
#output options
computecontour=false
profile=false
remove_cosmo_limits=false
remove_limits=false
doHesse=true
####################################################
4.926315e-08 -2.575031e-07 3.461125e-08 3.804235e-07 7.472491e-07 3.037513e-07 2.914142e-08 -1.787072e-04 3.543761e-06 5.685925e-05 -1.139563e-03 -5.148731e-04 -1.606712e-04 -2.896777e-06 -7.618810e-05 9.170223e-06 -1.907462e-06 -9.017177e-06 1.455053e-05 -1.133467e-10 -1.741360e-08
-2.575031e-07 4.755136e-06 -3.905979e-07 -4.179615e-06 -1.113883e-05 3.215298e-06 3.070672e-08 -1.881700e-04 -7.705557e-06 -1.609293e-04 5.049175e-03 1.900814e-03 1.082184e-03 1.699300e-03 2.736766e-04 -1.611488e-04 5.318588e-05 1.270896e-04 5.229086e-04 1.250949e-08 1.435228e-08
3.461125e-08 -3.905979e-07 2.034610e-07 3.236577e-07 1.188990e-06 -4.894963e-08 2.667701e-08 2.149552e-06 -1.015937e-06 9.445946e-06 -6.827919e-04 -1.555666e-04 -9.343932e-05 -5.740327e-05 -5.444787e-05 3.235930e-05 -2.532026e-05 -9.009887e-06 -6.126238e-06 -5.835999e-09 5.859236e-09
3.804235e-07 -4.179615e-06 3.236577e-07 5.007703e-05 1.252801e-05 8.880860e-05 -5.180355e-07 3.387810e-04 7.930770e-05 4.504384e-04 -1.814077e-02 -4.839598e-03 -2.291411e-03 -4.653239e-03 -9.447402e-04 -1.403792e-04 2.794041e-04 1.663281e-03 5.562380e-04 -4.200022e-07 2.629457e-07
7.472491e-07 -1.113883e-05 1.188990e-06 1.252801e-05 3.787147e-05 -4.229548e-06 -1.136473e-07 -3.977185e-03 1.323072e-04 1.780529e-03 -3.981718e-02 -1.097215e-02 1.116100e-03 2.221416e-03 -3.422700e-03 7.899668e-04 -3.677902e-04 -5.076385e-04 -4.431339e-04 -1.908805e-07 -3.508393e-07
3.037513e-07 3.215298e-06 -4.894963e-08 8.880860e-05 -4.229548e-06 2.128796e-04 1.169977e-05 -2.745612e-05 2.033268e-04 -3.209718e-05 -1.116375e-02 -2.506689e-03 -4.897591e-04 2.073699e-04 -2.032485e-03 -1.047551e-03 -8.302221e-05 3.448455e-03 5.117051e-03 -5.031509e-07 8.252143e-07
2.914142e-08 3.070672e-08 2.667701e-08 -5.180355e-07 -1.136473e-07 1.169977e-05 6.214661e-06 9.113213e-04 -2.196467e-06 -2.680409e-04 7.356076e-03 4.749173e-04 -7.985083e-04 4.976874e-04 1.211572e-04 -2.217273e-05 -1.408947e-05 6.752879e-05 1.082751e-03 1.328998e-08 1.716638e-07
-1.787072e-04 -1.881700e-04 2.149552e-06 3.387810e-04 -3.977185e-03 -2.745612e-05 9.113213e-04 4.268967e+01 -4.664845e-01 -8.376747e-01 3.848420e+01 4.994096e-01 -1.828132e+01 -5.924699e+01 -1.381550e-01 -4.508657e-01 2.455493e-01 -1.152413e+00 -1.723968e+01 -2.836229e-04 4.343771e-03
3.543761e-06 -7.705557e-06 -1.015937e-06 7.930770e-05 1.323072e-04 2.033268e-04 -2.196467e-06 -4.664845e-01 7.871347e-02 -6.950891e-02 -2.544991e-01 9.766619e-01 1.837644e+00 7.863632e-01 4.234596e-02 -1.234954e-02 2.726453e-03 5.970786e-02 6.712513e-02 1.684534e-05 -1.368118e-05
5.685925e-05 -1.609293e-04 9.445946e-06 4.504384e-04 1.780529e-03 -3.209718e-05 -2.680409e-04 -8.376747e-01 -6.950891e-02 3.521020e+00 -2.772562e+01 -3.985219e+00 6.908879e+00 5.670243e+00 -2.887008e+00 -2.099420e-02 -3.398928e-02 2.188227e+00 1.570981e+00 1.386078e-04 -2.993696e-04
-1.139563e-03 5.049175e-03 -6.827919e-04 -1.814077e-02 -3.981718e-02 -1.116375e-02 7.356076e-03 3.848420e+01 -2.544991e-01 -2.772562e+01 7.539645e+02 6.857785e+01 -4.753938e+01 -6.231250e+01 1.648015e+01 -4.380613e+00 5.456691e+00 -1.282644e+01 -1.835164e+01 6.565958e-03 3.346993e-03
-5.148731e-04 1.900814e-03 -1.555666e-04 -4.839598e-03 -1.097215e-02 -2.506689e-03 4.749173e-04 4.994096e-01 9.766619e-01 -3.985219e+00 6.857785e+01 6.570558e+01 4.870912e+01 2.208068e+01 -5.476972e+00 -6.610805e-01 -1.998762e+00 1.509982e+00 1.056185e+00 3.576505e-04 -7.075936e-05
-1.606712e-04 1.082184e-03 -9.343932e-05 -2.291411e-03 1.116100e-03 -4.897591e-04 -7.985083e-04 -1.828132e+01 1.837644e+00 6.908879e+00 -4.753938e+01 4.870912e+01 9.954740e+01 6.774619e+01 -1.401849e+01 -3.942840e-01 -1.423537e+00 2.668506e+00 2.154261e+00 1.047786e-03 -2.494122e-03
-2.896777e-06 1.699300e-03 -5.740327e-05 -4.653239e-03 2.221416e-03 2.073699e-04 4.976874e-04 -5.924699e+01 7.863632e-01 5.670243e+00 -6.231250e+01 2.208068e+01 6.774619e+01 1.219180e+02 -1.116558e+01 3.458189e-01 -1.180606e+00 -2.074396e+00 1.212293e+01 8.791605e-04 -7.833464e-03
-7.618810e-05 2.736766e-04 -5.444787e-05 -9.447402e-04 -3.422700e-03 -2.032485e-03 1.211572e-04 -1.381550e-01 4.234596e-02 -2.887008e+00 1.648015e+01 -5.476972e+00 -1.401849e+01 -1.116558e+01 6.893287e+00 -4.659390e-02 2.904772e-01 -1.793561e+00 -1.085157e+00 -1.738829e-04 2.304723e-04
9.170223e-06 -1.611488e-04 3.235930e-05 -1.403792e-04 7.899668e-04 -1.047551e-03 -2.217273e-05 -4.508657e-01 -1.234954e-02 -2.099420e-02 -4.380613e+00 -6.610805e-01 -3.942840e-01 3.458189e-01 -4.659390e-02 3.463189e+00 5.106699e-01 4.466513e-01 9.628785e-01 2.957108e-04 -2.297924e-05
-1.907462e-06 5.318588e-05 -2.532026e-05 2.794041e-04 -3.677902e-04 -8.302221e-05 -1.408947e-05 2.455493e-01 2.726453e-03 -3.398928e-02 5.456691e+00 -1.998762e+00 -1.423537e+00 -1.180606e+00 2.904772e-01 5.106699e-01 3.572022e+00 2.631293e+00 1.613891e+00 -2.213840e-04 -2.398611e-04
-9.017177e-06 1.270896e-04 -9.009887e-06 1.663281e-03 -5.076385e-04 3.448455e-03 6.752879e-05 -1.152413e+00 5.970786e-02 2.188227e+00 -1.282644e+01 1.509982e+00 2.668506e+00 -2.074396e+00 -1.793561e+00 4.466513e-01 2.631293e+00 1.635165e+01 2.433817e+01 -1.372738e-07 2.476606e-03
1.455053e-05 5.229086e-04 -6.126238e-06 5.562380e-04 -4.431339e-04 5.117051e-03 1.082751e-03 -1.723968e+01 6.712513e-02 1.570981e+00 -1.835164e+01 1.056185e+00 2.154261e+00 1.212293e+01 -1.085157e+00 9.628785e-01 1.613891e+00 2.433817e+01 5.277836e+01 1.018228e-04 4.572441e-03
-1.133467e-10 1.250949e-08 -5.835999e-09 -4.200022e-07 -1.908805e-07 -5.031509e-07 1.328998e-08 -2.836229e-04 1.684534e-05 1.386078e-04 6.565958e-03 3.576505e-04 1.047786e-03 8.791605e-04 -1.738829e-04 2.957108e-04 -2.213840e-04 -1.372738e-07 1.018228e-04 5.859365e-07 -6.638493e-09
-1.741360e-08 1.435228e-08 5.859236e-09 2.629457e-07 -3.508393e-07 8.252143e-07 1.716638e-07 4.343771e-03 -1.368118e-05 -2.993696e-04 3.346993e-03 -7.075936e-05 -2.494122e-03 -7.833464e-03 2.304723e-04 -2.297924e-05 -2.398611e-04 2.476606e-03 4.572441e-03 -6.638493e-09 2.100476e-06
......@@ -6,7 +6,23 @@ par 100*theta_s cosm 0.1040856E+01 0.6E-04 1.0170 1.0617
par tau_reio cosm 0.06 0.13E-01 0.01016 0.18221
par n_s cosm 0.9655817E+00 0.0070 0.9 1.1
par log(10^10A_s) cosm 0.3090333E+01 0.025 2.7 3.5
par A_planck nui 0.1000366E+01 0.01 0.9 1.1 #ycal
####################################################
#Likelihoods
#COMMANDER
clikfile=/afs/in2p3.fr/group/planck/plaszczy/clik_10.3/low_l/commander/commander_rc2_v1.1_l2_49_B.clik
#Lollipop
Lollipop=/Lollipop/lollipop.lal
#Plik
clikfile2=/afs/in2p3.fr/group/planck/plaszczy/clik_10.3/hi_l/plik/plik_dx11dr2_HM_v18_TT.clik
par A_cib_217 nui 0.6639331E+02 1 0 200 #OK Acib217
par xi_sz_cib nui 0.2910632E-01 .01 0 1 #xi_sz_cib
par A_sz nui 0.7107652E+01 1 0 10 #OK Atsz143
......@@ -22,6 +38,8 @@ par gal545_A_217 nui 0.8201474E+02 82.4 0 140 #OK AdustTT217
par calib_100T nui 0.9978837E+00 .2 0 3 #OK c100
par calib_217T nui 0.9958622E+00 .2 0 3 #OK c217
fix cib_index nui -1.3 .2 -5 5 #OK ncib
####################################################
####################################################
......@@ -39,21 +57,6 @@ gauss1 A_planck 1 0.0025
####################################################
#Likelihoods
#COMMANDER
clikfile=/afs/in2p3.fr/group/planck/plaszczy/clik_10.3/low_l/commander/commander_rc2_v1.1_l2_49_B.clik
#Lollipop
Lollipop=/Lollipop/lollipop.lal
#Plik
clikfile2=/afs/in2p3.fr/group/planck/plaszczy/clik_10.3/hi_l/plik/plik_dx11dr2_HM_v18_TT.clik
####################################################
####################################################
#pico neutrino setup
# 1 degenerated massive neutrino
......
4.926315e-08 -2.575031e-07 3.461125e-08 7.472491e-07 3.037513e-07 0.000000e+00 0.000000e+00 0.000000e+00 2.914142e-08 -1.133467e-10 -1.741360e-08 -1.787072e-04 3.543761e-06 5.685925e-05 -1.139563e-03 -5.148731e-04 -1.606712e-04 -2.896777e-06 -7.618810e-05 9.170223e-06 -1.907462e-06 -9.017177e-06 1.455053e-05
-2.575031e-07 4.755136e-06 -3.905979e-07 -1.113883e-05 3.215298e-06 0.000000e+00 0.000000e+00 0.000000e+00 3.070672e-08 1.250949e-08 1.435228e-08 -1.881700e-04 -7.705557e-06 -1.609293e-04 5.049175e-03 1.900814e-03 1.082184e-03 1.699300e-03 2.736766e-04 -1.611488e-04 5.318588e-05 1.270896e-04 5.229086e-04
3.461125e-08 -3.905979e-07 2.034610e-07 1.188990e-06 -4.894963e-08 0.000000e+00 0.000000e+00 0.000000e+00 2.667701e-08 -5.835999e-09 5.859236e-09 2.149552e-06 -1.015937e-06 9.445946e-06 -6.827919e-04 -1.555666e-04 -9.343932e-05 -5.740327e-05 -5.444787e-05 3.235930e-05 -2.532026e-05 -9.009887e-06 -6.126238e-06
7.472491e-07 -1.113883e-05 1.188990e-06 3.787147e-05 -4.229548e-06 0.000000e+00 0.000000e+00 0.000000e+00 -1.136473e-07 -1.908805e-07 -3.508393e-07 -3.977185e-03 1.323072e-04 1.780529e-03 -3.981718e-02 -1.097215e-02 1.116100e-03 2.221416e-03 -3.422700e-03 7.899668e-04 -3.677902e-04 -5.076385e-04 -4.431339e-04
3.037513e-07 3.215298e-06 -4.894963e-08 -4.229548e-06 2.128796e-04 0.000000e+00 0.000000e+00 0.000000e+00 1.169977e-05 -5.031509e-07 8.252143e-07 -2.745612e-05 2.033268e-04 -3.209718e-05 -1.116375e-02 -2.506689e-03 -4.897591e-04 2.073699e-04 -2.032485e-03 -1.047551e-03 -8.302221e-05 3.448455e-03 5.117051e-03
0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 2.468520e-03 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 1.130290e-03 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 2.622230e-08 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
2.914142e-08 3.070672e-08 2.667701e-08 -1.136473e-07 1.169977e-05 0.000000e+00 0.000000e+00 0.000000e+00 6.214661e-06 1.328998e-08 1.716638e-07 9.113213e-04 -2.196467e-06 -2.680409e-04 7.356076e-03 4.749173e-04 -7.985083e-04 4.976874e-04 1.211572e-04 -2.217273e-05 -1.408947e-05 6.752879e-05 1.082751e-03
-1.133467e-10 1.250949e-08 -5.835999e-09 -1.908805e-07 -5.031509e-07 0.000000e+00 0.000000e+00 0.000000e+00 1.328998e-08 5.859365e-07 -6.638493e-09 -2.836229e-04 1.684534e-05 1.386078e-04 6.565958e-03 3.576505e-04 1.047786e-03 8.791605e-04 -1.738829e-04 2.957108e-04 -2.213840e-04 -1.372738e-07 1.018228e-04
-1.741360e-08 1.435228e-08 5.859236e-09 -3.508393e-07 8.252143e-07 0.000000e+00 0.000000e+00 0.000000e+00 1.716638e-07 -6.638493e-09 2.100476e-06 4.343771e-03 -1.368118e-05 -2.993696e-04 3.346993e-03 -7.075936e-05 -2.494122e-03 -7.833464e-03 2.304723e-04 -2.297924e-05 -2.398611e-04 2.476606e-03 4.572441e-03
-1.787072e-04 -1.881700e-04 2.149552e-06 -3.977185e-03 -2.745612e-05 0.000000e+00 0.000000e+00 0.000000e+00 9.113213e-04 -2.836229e-04 4.343771e-03 4.268967e+01 -4.664845e-01 -8.376747e-01 3.848420e+01 4.994096e-01 -1.828132e+01 -5.924699e+01 -1.381550e-01 -4.508657e-01 2.455493e-01 -1.152413e+00 -1.723968e+01
3.543761e-06 -7.705557e-06 -1.015937e-06 1.323072e-04 2.033268e-04 0.000000e+00 0.000000e+00 0.000000e+00 -2.196467e-06 1.684534e-05 -1.368118e-05 -4.664845e-01 7.871347e-02 -6.950891e-02 -2.544991e-01 9.766619e-01 1.837644e+00 7.863632e-01 4.234596e-02 -1.234954e-02 2.726453e-03 5.970786e-02 6.712513e-02
5.685925e-05 -1.609293e-04 9.445946e-06 1.780529e-03 -3.209718e-05 0.000000e+00 0.000000e+00 0.000000e+00 -2.680409e-04 1.386078e-04 -2.993696e-04 -8.376747e-01 -6.950891e-02 3.521020e+00 -2.772562e+01 -3.985219e+00 6.908879e+00 5.670243e+00 -2.887008e+00 -2.099420e-02 -3.398928e-02 2.188227e+00 1.570981e+00
-1.139563e-03 5.049175e-03 -6.827919e-04 -3.981718e-02 -1.116375e-02 0.000000e+00 0.000000e+00 0.000000e+00 7.356076e-03 6.565958e-03 3.346993e-03 3.848420e+01 -2.544991e-01 -2.772562e+01 7.539645e+02 6.857785e+01 -4.753938e+01 -6.231250e+01 1.648015e+01 -4.380613e+00 5.456691e+00 -1.282644e+01 -1.835164e+01
-5.148731e-04 1.900814e-03 -1.555666e-04 -1.097215e-02 -2.506689e-03 0.000000e+00 0.000000e+00 0.000000e+00 4.749173e-04 3.576505e-04 -7.075936e-05 4.994096e-01 9.766619e-01 -3.985219e+00 6.857785e+01 6.570558e+01 4.870912e+01 2.208068e+01 -5.476972e+00 -6.610805e-01 -1.998762e+00 1.509982e+00 1.056185e+00
-1.606712e-04 1.082184e-03 -9.343932e-05 1.116100e-03 -4.897591e-04 0.000000e+00 0.000000e+00 0.000000e+00 -7.985083e-04 1.047786e-03 -2.494122e-03 -1.828132e+01 1.837644e+00 6.908879e+00 -4.753938e+01 4.870912e+01 9.954740e+01 6.774619e+01 -1.401849e+01 -3.942840e-01 -1.423537e+00 2.668506e+00 2.154261e+00
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