Capri-q Segmentation fault (core dumped)
Hello ! I have about 2 millions docking models created by haddock. I wanted to use this tool to evaluate them, especially for the irmsd, fcc that allows to assess the quality of a model based on https://doi.org/10.1016/j.jmb.2024.168540 and https://ars.els-cdn.com/content/image/1-s2.0-S0022283624001359-mmc1.pdf.
First I wanted to ask if this tool is made for large scale assessment? I have run the example and a variation of it with about 10 models in the .pdb file, but the calculation seem to take about 1min per models for one cpu in any case. Maybe I am doing something wrong? If not, is there a way to speed up the calculation, or to compute only a couple of metrics?
Next is the issue I am running into: I tried to run the code with my own examples. I have my target -t 1A14.pdb (2 chains A and B) the ligand and receptor -u 1A14_AG.pdb and -u 1A14_AB.pdb chain A and B respectively, and finnaly my model 1A14_00_251.pdb (chain A and B) produced y haddock3. I get a core dumped when I try this example and the code warns me that the chains in -u matches chains in my target.
Warning, prediction with 1 models contains 0 MD5 lines, only first 1 considered! Warning, chain id's in /data/1A14_1.pdb model 0 or 1A14_1_00_251 model 0 identical! Segmentation fault (core dumped)
However in the example the chains also match ...
This is my line of code: ` sudo docker run -v /path/new_inputs:/data --rm capri-q /bin/sh -c './capri-q/bin/capriq -a --dontwrite -t /data/1A14_1.pdb -u /data/1A14_1_AB.pdb -u /data/1A14_1_AG.pdb -o /data/results.txt -z capri-q/example/outputs -p 65 /data/1A14_1_00_251.pdb'
I can provide the .pdbs if needed.