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Created with Raphaël 2.2.017Feb1410310Jan4Dec229Nov20181576522Oct181611Add family name in gathered families.mastermasterAdd script and data of vertical-gathered families.Add script and graphics to show coverage and identity distributions of vertical similaritiesAdd selecty_homofam.pl to select families to gather.Add similarities to connected genes for parcimopny score >=2 and >=3.Add completes img with inverted homologiesmove completes_img to imgAdd reverted homologies to svgAdd revert homologies, modify create_svg_similarities.pl to generate reverted representations.Search_bubbles_homologies.pl can now detect inverted similarities..New script to convert hmmer output to blastout when alignment is invertedAdd completes svg homologiesAdd family number in svgAdd family number in svgAdd compute wallaceAdd wallaces and jaccard indexs to svgAdd wallaces and jaccard indexs to svgsAdd wallaces and jaccard index, permute w1 and w2 in output.Add computations of wallaces and jaccard indexs for the species composition of familiesAdd MSAsAdd conversion to blastoutAdd fasta familiesAdd homologies imgAdd script to extract only one bubble in homology fileNew script that create a svg picture of homologiesadd family lenghtAdd family len (hmm len).add homologies between families not in bubblesAdd kind homologies for data not given by deco*add void homologiesAdd void homologiesdataset of kinds of homologiesnew script to sort homologies by different kindsInitial commit