Bug fix: take renames into account

Take into account renaming of files in f7075db7 and moving to new
directory in 125569d8.

Tests/short_tests.json

@@ -1034,7 +1034,7 @@
     },
     {
 	"title": "Graph_from_Matlab_v6_cyclo",
-	"command": ["$src_dir/Analysis/make_graph_from_Matlab_v6.py", "cyclo"],
+	"command": ["$src_dir/Convert_Matlab/overlap_v6.py", "cyclo"],
 	"required":
 	[
 	    "$src_dir/Tests/Input/Eurec4A_OA/id_child_cyclo.mat",
@@ -1045,7 +1045,7 @@
     },
     {
 	"title": "Graph_from_Matlab_v6_anti",
-	"command": ["$src_dir/Analysis/make_graph_from_Matlab_v6.py", "anti"],
+	"command": ["$src_dir/Convert_Matlab/overlap_v6.py", "anti"],
 	"required":
 	[
 	    "$src_dir/Tests/Input/Eurec4A_OA/id_child_anti.mat",
@@ -1095,7 +1095,7 @@
     },
     {
 	"title": "Mat_v6_to_shapefiles",
-	"command": "$src_dir/Analysis/mat_v6_to_shapefiles.py",
+	"command": "$src_dir/Convert_Matlab/inst_eddies_v6.py",
 	"required": ["$src_dir/Tests/Input/Eurec4A_OA/adt_2019-12-15_v6.mat"]
     },
     {
@@ -1117,7 +1117,7 @@
     },
     {
 	"title": "Mat_HDF5_to_shapefiles",
-	"command": "$src_dir/Analysis/mat_HDF5_to_shapefiles.py",
+	"command": "$src_dir/Convert_Matlab/inst_eddies_HDF5.py",
 	"required": ["$src_dir/Tests/Input/Eurec4A_OA/adt_2019-12-15.mat"]
     }
 ]