Give default value True to argument renumber

Inst_eddies/Analysis/filter.py

@@ -10,7 +10,7 @@ import shapefile
 from os import path
 import numpy as np
 
-def filter(input_dir, output_dir, renumber, accept_func):
+def filter(input_dir, output_dir, accept_func, renumber = True):
     with shapefile.Reader(path.join(input_dir, "extremum")) as extremum, \
          shapefile.Reader(path.join(input_dir, "outermost_contour")) \
          as outermost_cont, \
@@ -79,5 +79,5 @@ if __name__ == "__main__":
                         help = "do not reset indices of eddies",
                         action = "store_true")
     args = parser.parse_args()
-    filter(args.input_dir, args.output_dir, not args.keep_indices,
-           accept.accept)
+    filter(args.input_dir, args.output_dir, accept.accept,
+           not args.keep_indices)

Overlap/Tests/split_SHPC.py

@@ -15,8 +15,7 @@ my_dir = path.join(sys.argv[1], "Slice_0/Anticyclones")
 for n in range(3):
     date_1 = 20454 + n * 5
     accept = functools.partial(in_date_range, date_1 = date_1)
-    filter.filter(my_dir, f"SHPC/Slice_{n}/Anticyclones",
-                  renumber = True, accept_func= accept)
+    filter.filter(my_dir, f"SHPC/Slice_{n}/Anticyclones", accept_func= accept)
 
 with open("SHPC/n_slices.txt", "w") as f: f.write("3\n")
 fname = path.join(sys.argv[1], "grid_nml.txt")