Add documentation.

Documentation_texfol/.gitignore

+/*.aux
+/*.log
+/*.out
+/*.pdf
+/*.synctex*
+/*.toc
+/auto/
\ No newline at end of file

Documentation_texfol/Graphiques/.gitignore

+call_graph.pdf
+degeneracy.pdf
+input_output.pdf
+m3.pdf
+processes.pdf
+regions.pdf
+window.pdf

Documentation_texfol/Graphiques/GNUmakefile

+sources = window processes m3 call_graph input_output degeneracy
+
+objects := $(addsuffix .pdf, ${sources})
+
+%.pdf: %.gv
+	dot -Tpdf -o $@ $<
+
+%.pdf: %.odg
+	unoconv --doctype=graphics $<
+
+all: ${objects}
+
+clean:
+	rm -f ${objects}

Documentation_texfol/Graphiques/call_graph.gv

+digraph call_graph
+{
+	main -> {get_snapshot successive_overlap non_successive_overlap};
+	main -> dispatch_snapshot;
+	non_successive_overlap -> {interpolate_eddy weight};
+	dispatch_snapshot -> write_eddy;
+	interpolate_eddy -> write_eddy;
+	successive_overlap -> weight;
+}
\ No newline at end of file

Documentation_texfol/Graphiques/regions.py

+#!/usr/bin/env python3
+
+import netCDF4
+from mpl_toolkits import basemap
+import jumble
+from matplotlib import pyplot as plt
+import glob
+import itertools
+
+m = basemap.Basemap(llcrnrlon=-30, llcrnrlat=-90, urcrnrlon=60, urcrnrlat = 0)
+plt.figure()
+m.drawcoastlines()
+m.drawmeridians(range(0,361, 15), labels = [0, 0, 0, 1])
+m.drawparallels(range(-90,91, 15), labels = [1, 0, 0, 0])
+colors = itertools.cycle(['blue', 'orange', 'green', 'red', 'purple', 'brown',
+                          'pink', 'gray', 'olive', 'cyan'])
+
+for filename in glob.glob("h_region_*.nc") + ["h_outermost.nc"]:
+    with netCDF4.Dataset(filename) as f:
+        jumble.draw_bbox(f.variables["lon"][0], f.variables["lon"][-1],
+                         f.variables["lat"][0], f.variables["lat"][-1],
+                         colors = [next(colors)], label = filename)
+
+plt.legend(loc = "lower left", bbox_to_anchor = (1, 0.5))
+plt.subplots_adjust(right = 0.7)
+plt.savefig("regions.pdf")
+##plt.show()