Write missing quantities to file

lisainstrument/instrument.py

@@ -900,7 +900,9 @@ class Instrument:
 
         self.simulate_noises()
 
-        logger.debug("Computing local THE with respect to TCB")
+        ## Timing quantities
+
+        logger.debug("Integrating clock noise fluctuations")
 
         self.integrated_clock_noise_fluctuations_withinitial = \
             ForEachSC(lambda sc:
@@ -909,13 +911,12 @@ class Instrument:
                     self.physics_size + self.initial_telemetry_physics_size),
                 dx=self.physics_dt, initial=0)
             )
-
-        # Slice to only select physics period
         self.integrated_clock_noise_fluctuations = \
             self.integrated_clock_noise_fluctuations_withinitial.transformed(
                 lambda _, x: x if np.isscalar(x) else x[self.initial_telemetry_physics_size:]
             )
 
+        logger.debug("Computing local THE with respect to TPS")
         t = self.physics_et
         self.the_wrt_tps_local = \
             self.clock_offsets \
@@ -924,6 +925,7 @@ class Instrument:
             + self.clock_freqquaddrifts * t**3 / 3 \
             + self.integrated_clock_noise_fluctuations
 
+        logger.debug("Computing THE with respect to TCB")
         t = self.physics_et_withinitial
         self.the_wrt_tcb_withinitial = \
             self.tps_wrt_tcb \
@@ -936,6 +938,8 @@ class Instrument:
             + self.tps_wrt_tcb * self.clock_noise_fluctuations_withinitial \
             + self.integrated_clock_noise_fluctuations_withinitial
 
+        ## MOC time correlations
+
         logger.debug("Computing MOC time correlations")
         physics_to_telemetry = lambda _, x: x[::self.physics_upsampling * self.telemetry_downsampling]
         self.moc_time_correlations = self.moc_time_correlation_noises \
@@ -1865,6 +1869,9 @@ class Instrument:
                 self.pprs.write(hdf5, 'pprs')
                 self.d_pprs.write(hdf5, 'd_pprs')
 
+                logger.debug("Writing TPS with respect to TCB to '%s'", output)
+                self.tps_wrt_tcb.write(hdf5, 'tps_wrt_tcb')
+
                 logger.debug("Writing gravitational-wave responses to '%s'", output)
                 self.gws.write(hdf5, 'gws')
 
@@ -1881,7 +1888,8 @@ class Instrument:
                 logger.debug("Writing clock noise to '%s'", output)
                 self.clock_noise_offsets.write(hdf5, 'clock_noise_offsets')
                 self.clock_noise_fluctuations.write(hdf5, 'clock_noise_fluctuations')
-                self.clock_noise_fluctuations_withinitial.write(hdf5, 'clock_noise_fluctuations_withinitial')
+                self.clock_noise_fluctuations_withinitial.write(
+                    hdf5, 'clock_noise_fluctuations_withinitial')
 
                 logger.debug("Writing modulation noise to '%s'", output)
                 self.modulation_noises.write(hdf5, 'modulation_noises')
@@ -1924,9 +1932,21 @@ class Instrument:
                 self.local_usb_offsets.write(hdf5, 'local_usb_offsets')
                 self.local_usb_fluctuations.write(hdf5, 'local_usb_fluctuations')
 
+                logger.debug("Writing integrated clock noise fluctuations to '%s'", output)
+                self.integrated_clock_noise_fluctuations_withinitial.write(
+                    hdf5, 'integrated_clock_noise_fluctuations_withinitial')
+                self.integrated_clock_noise_fluctuations.write(
+                    hdf5, 'integrated_clock_noise_fluctuations')
+
                 logger.debug("Writing local THE with respect to TPS to '%s'", output)
+                self.the_wrt_tps_local.write(hdf5, 'the_wrt_tps_local')
+
+                logger.debug("Writing THE with respect to TCB to '%s'", output)
                 self.the_wrt_tcb_withinitial.write(hdf5, 'the_wrt_tcb_withinitial')
 
+                logger.debug("Writing MOC time correlations to '%s'", output)
+                self.moc_time_correlations.write(hdf5, 'moc_time_correlations')
+
                 logger.debug("Writing tilt-to-length couplings to '%s'", output)
                 self.local_ttls.write(hdf5, 'local_ttls')
                 self.distant_ttls.write(hdf5, 'distant_ttls')
@@ -2112,9 +2132,6 @@ class Instrument:
             self.rfi_carriers.write(hdf5, 'rfi_carriers')
             self.rfi_usbs.write(hdf5, 'rfi_usbs')
 
-            logger.debug("Write THE with respect to TPS from TCB to '%s'", output)
-            self.moc_time_correlations.write(hdf5, 'moc_time_correlations')
-
             logger.info("Closing measurement file '%s'", output)
 
     def plot_fluctuations(self, output=None, skip=0):