Environment

#!/bin/bash
#
#########################################
#
# Script to build and maintain en environment to run
# the python code in this directory. We verify that
# all needed packages are available.
# This is based on the anaconda python system : https://www.anaconda.com/distribution/
#
# Usage : source Environment
#
#########################################
#
# Functions
#
function hasanaconda (){
    condahost="camelot climserv ciclad"
    h=$(hostname)
    res=1
    for ch in ${condahost} ; do
	if [ $(echo $h | grep ${ch} | wc -c) != "0" ] ; then
	    res=0
	fi
    done
    return $res
}
function checkenv (){
    rm -f checkenv.py
    cat <<EOF > checkenv.py
import mpi4py
import spherical_geometry
import netCDF4
import matplotlib
import mpl_toolkits
import configparser
import numba
import cartopy
print ("OK")
EOF
    python checkenv.py > /dev/null
    if [ $? -gt 0 ] ; then
	echo "Environment not OK. Some packages must be missing."
	echo "This was tested with the checkenv.py code."
    else
	rm -f checkenv.py
    fi
}
#
# Main
#
if ( hasanaconda ) ; then
    #
    # Make sure the right version of Python
    #
    module unload python
    module load python/3.6-anaconda50
    #
    # Test if the MPI environment is installed.
    #
    if [ ! -e ${HOME}/.conda/envs/MPI ] ; then
	#
	# Create the MPI environment as it does not exist.
	#
	conda create -y -n MPI mpi4py numba astropy netcdf4 matplotlib basemap ConfigParser
	source activate MPI
	conda install -y cartopy
	conda install -y --channel astropy spherical-geometry
    fi
    #
    # Activate the MPI environment
    #
    source activate MPI
fi
#
# Verify we can load all the needed modules.
#
checkenv