Commit ef231c0b authored by POLCHER Jan's avatar POLCHER Jan 🚴🏾
Browse files

first sample script proposed.

parent 8118ade1
initatmgrid(polygons_in,centre_in,area_in,contfrac_in,neighbours_in,[nbpt,nbseg])
Wrapper for ``initatmgrid``.
Parameters
----------
polygons_in : input rank-3 array('f') with bounds (nbpt,2 * nbseg + 1,2)
centre_in : input rank-2 array('f') with bounds (nbpt,2)
area_in : input rank-1 array('f') with bounds (nbpt)
contfrac_in : input rank-1 array('f') with bounds (nbpt)
neighbours_in : input rank-2 array('i') with bounds (nbpt,2 * nbseg)
Other Parameters
----------------
nbpt : input int, optional
Default: shape(polygons_in,0)
nbseg : input int, optional
Default: (shape(polygons_in,1)-1)/(2)
====================================================================
nbi,nbj,area_bx,trip_bx,basin_bx,topoind_bx,fac_bx,hierarchy_bx,lon_bx,lat_bx,lshead_bx,nwbas = gethydrogrid(nbxmax_in,sub_pts,sub_index,sub_area,max_basins,min_topoind,lon_rel,lat_rel,trip,basins,topoindex,fac,hierarchy,[nbpt,nbvmax_in])
Wrapper for ``gethydrogrid``.
Parameters
----------
nbxmax_in : input int
sub_pts : input rank-1 array('i') with bounds (nbpt)
sub_index : input rank-3 array('i') with bounds (nbpt,nbvmax_in,2)
sub_area : input rank-2 array('f') with bounds (nbpt,nbvmax_in)
max_basins : in/output rank-0 array(float,'f')
min_topoind : input float
lon_rel : input rank-2 array('f') with bounds (nbpt,nbvmax_in)
lat_rel : input rank-2 array('f') with bounds (nbpt,nbvmax_in)
trip : in/output rank-2 array('f') with bounds (nbpt,nbvmax_in)
basins : in/output rank-2 array('f') with bounds (nbpt,nbvmax_in)
topoindex : in/output rank-2 array('f') with bounds (nbpt,nbvmax_in)
fac : in/output rank-2 array('f') with bounds (nbpt,nbvmax_in)
hierarchy : in/output rank-2 array('f') with bounds (nbpt,nbvmax_in)
Other Parameters
----------------
nbpt : input int, optional
Default: len(sub_pts)
nbvmax_in : input int, optional
Default: shape(sub_index,1)
Returns
-------
nbi : rank-1 array('i') with bounds (nbpt)
nbj : rank-1 array('i') with bounds (nbpt)
area_bx : rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
trip_bx : rank-3 array('i') with bounds (nbpt,nbxmax_in,nbxmax_in)
basin_bx : rank-3 array('i') with bounds (nbpt,nbxmax_in,nbxmax_in)
topoind_bx : rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
fac_bx : rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
hierarchy_bx : rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
lon_bx : rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
lat_bx : rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
lshead_bx : rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
nwbas : int
====================================================================
nb_basin,basin_inbxid,basin_outlet,basin_outtp,basin_sz,basin_bxout,basin_bbout,basin_pts,basin_lshead,coast_pts = findbasins(nbvmax_in,nbi,nbj,trip_bx,basin_bx,fac_bx,hierarchy_bx,topoind_bx,lshead_bx,lontmp,lattmp,[nbpt,nbxmax_in])
Wrapper for ``findbasins``.
Parameters
----------
nbvmax_in : input int
nbi : input rank-1 array('i') with bounds (nbpt)
nbj : input rank-1 array('i') with bounds (nbpt)
trip_bx : in/output rank-3 array('i') with bounds (nbpt,nbxmax_in,nbxmax_in)
basin_bx : in/output rank-3 array('i') with bounds (nbpt,nbxmax_in,nbxmax_in)
fac_bx : input rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
hierarchy_bx : input rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
topoind_bx : in/output rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
lshead_bx : input rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
lontmp : input rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
lattmp : input rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
Other Parameters
----------------
nbpt : input int, optional
Default: len(nbi)
nbxmax_in : input int, optional
Default: shape(trip_bx,1)
Returns
-------
nb_basin : rank-1 array('i') with bounds (nbpt)
basin_inbxid : rank-2 array('i') with bounds (nbpt,nbvmax_in)
basin_outlet : rank-3 array('f') with bounds (nbpt,nbvmax_in,2)
basin_outtp : rank-2 array('f') with bounds (nbpt,nbvmax_in)
basin_sz : rank-2 array('i') with bounds (nbpt,nbvmax_in)
basin_bxout : rank-2 array('i') with bounds (nbpt,nbvmax_in)
basin_bbout : rank-2 array('i') with bounds (nbpt,nbvmax_in)
basin_pts : rank-4 array('i') with bounds (nbpt,nbvmax_in,nbvmax_in,2)
basin_lshead : rank-2 array('f') with bounds (nbpt,nbvmax_in)
coast_pts : rank-2 array('i') with bounds (nbpt,nbvmax_in)
====================================================================
basin_count,basin_notrun,basin_area,basin_hierarchy,basin_fac,basin_topoind,basin_id,basin_coor,basin_type,basin_flowdir,basin_lshead,outflow_grid,outflow_basin,nbcoastal,coastal_basin = globalize(area_bx,trip_bx,hierarchy_bx,fac_bx,topoind_bx,min_topoind,nb_basin,basin_inbxid,basin_outlet,basin_outtp,basin_sz,basin_pts,basin_bxout,basin_bbout,lshead,coast_pts,nwbas,[nbpt,nbvmax_in,nbxmax_in])
Wrapper for ``globalize``.
Parameters
----------
area_bx : input rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
trip_bx : input rank-3 array('i') with bounds (nbpt,nbxmax_in,nbxmax_in)
hierarchy_bx : input rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
fac_bx : input rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
topoind_bx : input rank-3 array('f') with bounds (nbpt,nbxmax_in,nbxmax_in)
min_topoind : input float
nb_basin : input rank-1 array('i') with bounds (nbpt)
basin_inbxid : input rank-2 array('i') with bounds (nbpt,nbvmax_in)
basin_outlet : input rank-3 array('f') with bounds (nbpt,nbvmax_in,2)
basin_outtp : input rank-2 array('f') with bounds (nbpt,nbvmax_in)
basin_sz : input rank-2 array('i') with bounds (nbpt,nbvmax_in)
basin_pts : input rank-4 array('i') with bounds (nbpt,nbvmax_in,nbvmax_in,2)
basin_bxout : input rank-2 array('i') with bounds (nbpt,nbvmax_in)
basin_bbout : input rank-2 array('i') with bounds (nbpt,nbvmax_in)
lshead : input rank-2 array('f') with bounds (nbpt,nbvmax_in)
coast_pts : input rank-2 array('i') with bounds (nbpt,nbvmax_in)
nwbas : input int
Other Parameters
----------------
nbpt : input int, optional
Default: shape(area_bx,0)
nbvmax_in : input int, optional
Default: shape(basin_inbxid,1)
nbxmax_in : input int, optional
Default: shape(area_bx,1)
Returns
-------
basin_count : rank-1 array('i') with bounds (nbpt)
basin_notrun : rank-1 array('i') with bounds (nbpt)
basin_area : rank-2 array('f') with bounds (nbpt,nwbas)
basin_hierarchy : rank-2 array('f') with bounds (nbpt,nwbas)
basin_fac : rank-2 array('f') with bounds (nbpt,nwbas)
basin_topoind : rank-2 array('f') with bounds (nbpt,nwbas)
basin_id : rank-2 array('i') with bounds (nbpt,nwbas)
basin_coor : rank-3 array('f') with bounds (nbpt,nwbas,2)
basin_type : rank-2 array('f') with bounds (nbpt,nwbas)
basin_flowdir : rank-2 array('i') with bounds (nbpt,nwbas)
basin_lshead : rank-2 array('f') with bounds (nbpt,nwbas)
outflow_grid : rank-2 array('i') with bounds (nbpt,nwbas)
outflow_basin : rank-2 array('i') with bounds (nbpt,nwbas)
nbcoastal : rank-1 array('i') with bounds (nbpt)
coastal_basin : rank-2 array('i') with bounds (nbpt,nwbas)
====================================================================
inflow_number,inflow_grid,inflow_basin = linkup(nbxmax_in,basin_count,basin_area,basin_id,basin_flowdir,basin_lshead,basin_hierarchy,basin_fac,outflow_grid,outflow_basin,nbcoastal,coastal_basin,invented_basins,[nbpt,nwbas])
Wrapper for ``linkup``.
Parameters
----------
nbxmax_in : input int
basin_count : input rank-1 array('i') with bounds (nbpt)
basin_area : input rank-2 array('f') with bounds (nbpt,nwbas)
basin_id : input rank-2 array('i') with bounds (nbpt,nwbas)
basin_flowdir : input rank-2 array('i') with bounds (nbpt,nwbas)
basin_lshead : input rank-2 array('f') with bounds (nbpt,nwbas)
basin_hierarchy : in/output rank-2 array('f') with bounds (nbpt,nwbas)
basin_fac : input rank-2 array('f') with bounds (nbpt,nwbas)
outflow_grid : in/output rank-2 array('i') with bounds (nbpt,nwbas)
outflow_basin : in/output rank-2 array('i') with bounds (nbpt,nwbas)
nbcoastal : in/output rank-1 array('i') with bounds (nbpt)
coastal_basin : in/output rank-2 array('i') with bounds (nbpt,nwbas)
invented_basins : input float
Other Parameters
----------------
nbpt : input int, optional
Default: len(basin_count)
nwbas : input int, optional
Default: shape(basin_area,1)
Returns
-------
inflow_number : rank-2 array('i') with bounds (nbpt,8 * nbxmax_in)
inflow_grid : rank-3 array('i') with bounds (nbpt,8 * nbxmax_in,8 * nbxmax_in)
inflow_basin : rank-3 array('i') with bounds (nbpt,8 * nbxmax_in,8 * nbxmax_in)
====================================================================
fetch_basin = fetch(basin_count,basin_area,basin_id,basin_hierarchy,basin_fac,outflow_grid,outflow_basin,[nbpt,nwbas])
Wrapper for ``fetch``.
Parameters
----------
basin_count : input rank-1 array('i') with bounds (nbpt)
basin_area : in/output rank-2 array('f') with bounds (nbpt,nwbas)
basin_id : input rank-2 array('i') with bounds (nbpt,nwbas)
basin_hierarchy : input rank-2 array('f') with bounds (nbpt,nwbas)
basin_fac : input rank-2 array('f') with bounds (nbpt,nwbas)
outflow_grid : in/output rank-2 array('i') with bounds (nbpt,nwbas)
outflow_basin : input rank-2 array('i') with bounds (nbpt,nwbas)
Other Parameters
----------------
nbpt : input int, optional
Default: len(basin_count)
nwbas : input int, optional
Default: shape(basin_area,1)
Returns
-------
fetch_basin : rank-2 array('f') with bounds (nbpt,nwbas)
====================================================================
routing_area,topo_resid,route_togrid,route_tobasin,route_nbintobas,global_basinid,route_outlet,route_type,origin_nbintobas = truncate(nbasmax,basin_count,basin_notrun,basin_area,basin_topoind,fetch_basin,basin_id,basin_coor,basin_type,basin_flowdir,outflow_grid,outflow_basin,inflow_number,inflow_grid,inflow_basin,[nbpt,nbxmax_in,nwbas])
Wrapper for ``truncate``.
Parameters
----------
nbasmax : input int
basin_count : in/output rank-1 array('i') with bounds (nbpt)
basin_notrun : in/output rank-1 array('i') with bounds (nbpt)
basin_area : in/output rank-2 array('f') with bounds (nbpt,nwbas)
basin_topoind : in/output rank-2 array('f') with bounds (nbpt,nwbas)
fetch_basin : in/output rank-2 array('f') with bounds (nbpt,nwbas)
basin_id : in/output rank-2 array('i') with bounds (nbpt,nwbas)
basin_coor : in/output rank-3 array('f') with bounds (nbpt,nwbas,2)
basin_type : in/output rank-2 array('f') with bounds (nbpt,nwbas)
basin_flowdir : in/output rank-2 array('i') with bounds (nbpt,nwbas)
outflow_grid : in/output rank-2 array('i') with bounds (nbpt,nwbas)
outflow_basin : in/output rank-2 array('i') with bounds (nbpt,nwbas)
inflow_number : in/output rank-2 array('i') with bounds (nbpt,8 * nbxmax_in)
inflow_grid : in/output rank-3 array('i') with bounds (nbpt,8 * nbxmax_in,8 * nbxmax_in)
inflow_basin : in/output rank-3 array('i') with bounds (nbpt,8 * nbxmax_in,8 * nbxmax_in)
Other Parameters
----------------
nbpt : input int, optional
Default: len(basin_count)
nbxmax_in : input int, optional
Default: (shape(inflow_number,1))/(8)
nwbas : input int, optional
Default: shape(basin_area,1)
Returns
-------
routing_area : rank-2 array('f') with bounds (nbpt,nbasmax)
topo_resid : rank-2 array('f') with bounds (nbpt,nbasmax)
route_togrid : rank-2 array('i') with bounds (nbpt,nbasmax)
route_tobasin : rank-2 array('i') with bounds (nbpt,nbasmax)
route_nbintobas : rank-1 array('i') with bounds (nbpt)
global_basinid : rank-2 array('i') with bounds (nbpt,nbasmax)
route_outlet : rank-3 array('f') with bounds (nbpt,nbasmax,2)
route_type : rank-2 array('f') with bounds (nbpt,nbasmax)
origin_nbintobas : rank-1 array('i') with bounds (nbpt)
......@@ -29,7 +29,6 @@ import RPPtools as RPP
import HydroGrid as HG
import diagplots as DP
import Interface as IF
import savefile
#
# Logging in MPI : https://groups.google.com/forum/#!topic/mpi4py/SaNzc8bdj6U
#
......
#!/bin/bash
#
#PBS -N BuildHTUs
#
#PBS -j oe
#PBS -l nodes=1:ppn=42
#PBS -l walltime=48:00:00
#PBS -l mem=120gb
#PBS -l vmem=120gb
#
cd ${PBS_O_WORKDIR}/..
cp ./TestConfigs/run.def.05_CS run.def
#
# Set the right Python 3 Anaconda environment
#
source ./Environment
#
# Run the Python code to generate the HTUs and write them into a netCDF file.
#
mpirun -n 42 python RoutingPreProc.py
#
ls -l
......@@ -18,7 +18,7 @@ nbasmax = 35
#
# Output
#
GraphFile = test_graph.nc
GraphFile = EM_WFDEI_test_graph.nc
#
# Diagnostics
# You need to provide an interval in longitude and Latitude.
......
[OverAll]
#
#
EarthRadius = 6370000.
#
ModelGridFile = /bdd/MEDI/workspaces/polcher/NewRouting/EM_WFDEI_CRU_2000.nc
##WEST_EAST = -9.75, 5.25
##SOUTH_NORTH = 36.1, 44.2
HydroFile = /bdd/MEDI/workspaces/polcher/NewRouting/routing_MED.nc
#
# FORTRAN interface parameters
#
Documentation = true
#
# Configuration for the graph to be generated
#
nbasmax = 35
#
# Output
#
GraphFile = EM_WFDEI_test_graph.nc
#
# Diagnostics
# You need to provide an interval in longitude and Latitude.
#
DiagLon = 39.9, 39.9
DiagLat = 40.0, 40.0
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