Bug observed on empirical data
I got a problem which I suppose was due to an alignment where not all species were present:
singularity exec -B /home/boussau/Work/phoogle/Farré_2021 ../imagePelican/pelican.sif pelican store results -o results/farre_continuous_log_best_sites.faln /run/farre_continuous_log/best_sites_alignment
Weird, sequence chrAsi1 is not found in the tree used for analysis farre_continuous_log.