Modified readme and snakefile

Projects/AlPhaPha/2024/ReadMe.md

@@ -18,11 +18,13 @@ cmake -DCMAKE_EXPORT_COMPILE_COMMANDS=1
 In project config modifiy analysis output before doing a test analysis
 
 # Config NPTOOL
-when doing cmake for npl do -DNPMULTITHREADING=0 to facilitate multithreading
-with snakemake
+when doing cmake for npl do 
+```
+-DNPMULTITHREADING=0
+ ```
+to facilitate multithreading with snakemake
 
-# Config for SnakeMake
- 
+# Config for SnakeMake 
 You *NEED* Python3.12
 
 ## venv 
@@ -31,5 +33,7 @@ python3.12 -m venv ./.venv
 source ./.venv/bin.activate
 pip install snakemake
 ```
+## Snakefile
+Don't forget to modify the input file .
 
 Your project.config must point to the root dir of your computer

Projects/AlPhaPha/2024/Snakefile

@@ -3,7 +3,7 @@ import subprocess
 
 # Lire le répertoire d'entrée depuis les arguments de configuration
 #input_directory = config["folder"]
-input_directory = os.getcwd() + "/../DataMacro/output"
+input_directory = os.getcwd() + "/../DataMacro/output/run_241"
 origin = [] 
 # Iterate over files in input_directory
 for filename in os.listdir(input_directory):